Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00505 ATGGCGTTGCTGCGCAAATTGTTCTTCCGGAAGCCGCCCGATGGCCTTCTCGAGATCTGTGAAAGAGTTTACGTTTTTGATTGCTGTTTTACCACAGATTCGTGGAAGGAGAAGAATTATGAAGCTTACTTATGTGGAATAGTTGCTCAACTCAGAGAGCATTTAGCAGATGCATCGTTCTTGGTATTCAATTTTAGGAGATTAGAGATGCAAAGTCAGATGGGTGATATCTTATCGAAGTATGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGTTGTCCAGTTCTGACAATGGAAGTGCTTCACCATTTTCTAAGATCATGTGAGAGTTGGCTTTCCCTTGGACAAAATAACGTTTTGCTAATGCACTGTGAGCGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCGGCTCTCTTGATTTTTAGGAAACAATATAGTGGGGAGCAAAGAACATTGGACATGGTTTACAGGCAGGCACCGCGTGAGCTTTTACATGTTTTGTCTCCTATGAATCCAGTTCCTTCTCAATTAAGATATCTTCAATACATTGCAAGGAGGAATGTAGCCTTAGAATGGCCACCTATGGACAGAGCTCTCACTTTGGATTGTATCATTTTGAGATTTATTCCAAATGTTGATGGAGAGGGTGGTTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTGCTCGTCAGTGATCGAGCTCCTAAAGTTCTGTATTCAACTCCAAAAAGAAGTAAAAATGTCCGTTCTTACAAACAGGTAGAATCAGAACTGGTTAAGATTGATATTAATTGCCATATTCAAGGAGATGTCGTTCTTGAGTGCATCAGCTTGCATGACGACATGGAATCTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATCTTAATTGTCAACCGTGAAGAGATCGACACTTTATGGAACGCTAAAGATAAATTTCCAAAGGAGTTTCGAGCAGAGATTCTTTTCTCTGAGATGGATGCTGGAACTTCTACTGTTCCAAATGATATACTTTGCATTGAGGAGGATGGTCTCCCCATTGAAGCATTTGCTAAAGTACAAGAGATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCCCTTAATATGCTTCATCAGATGAATGCCTTAAACATAGCCCAAGAAAAGACAGACAATAATTCTCTTTGGAGTACACAATTTAGTTCTTTACTTCAGTGTACAAGTCCCAGAAAACTTCCGCAGAAGTTCACATTGGAGAACAAACTTTTCCTAGAGAAGGAAGAGTCTGTTCCAACATCTAAGTTTTCTCCGGATGCTGCTAAAACTGAACAGAACAATGAACCTGATTCAGTATTCCAACAGGTGCCTCGATCTTCAGGGTCTTTCCCACTTAACTATGACATTTTGCAAGATTCGCGGAATTCAGAGAGAAGCAATAGGACCTCACACAGTGCTTCGGTTGGAAGCCACTCATTTCTTGATTCTGAAGGAGAAACAGAGGTTTCTCATCTGAAAACTGCATCTTCATCTTTTCTGAATGCAGCATTGGCTGTTTCTCTTGCGCCTGAATCTCTTCGCACTAAAAGTTTCCTTACAGGGACAACCATGCCACCACCTCCTCCTCTCCCCCAACTTTCCATGGATATTTCTGTTGCTAATTCTGTAGCTTATCCTCCCCCTCCAACTGCATCAGCACTTCCGTCTAATAATTTATCAACTCTAGGACCAGATAAATCTTCTCTCACCGAGGAAAGAAAAATCTATTCAAAGGATCAAAGTCAGTTATCAACCATTGGCCCTCCCCTGTCTGTAACCTCAGCAATTGCATCCTTAGTGCCTCAACCACCACCTCCTCTTTGTACATCCACTGTAAATCATACAATTTCATCTCCAGTTCCTTTGCCACCACCACCTCCGCCTCCACCTCTTCCTATGACGTCTAAACAGGATGAAAGTACTTCAACATCTCCATTTGTTCCTCCTCCACCACCACCACCTCTTCTTATGACATCCATGCAGTTTGGAAGTACTTCAACATCTTCTTCTGTTCCACCTCCGCCCCCACCTCTTCCGTTTAGACCGGTTGAATATACTTCAACATCTTCTTCTGTTCCACCTCCGCCCCCACCTCTTCCGTTTAGACCGGTTGAATATACTTCAACATCTCCATCTGTTCCCCCTCCTCCACCACCGCCAACTTCCACCACAGGCTCCTCTTCAGCTGTTCCTTCTGCTCCCCCTCCTCCTACCCTTTCTGGGAGAGGGACTTCAAAATCTGGTGAACTATGTTCTGATTCTCTTCTCGAAAATGGTTTGTCTAGGTGTCCTCCGCCACCAAATAGTTATCCATTAGGTATAAAGGGACGGAGTTTGTCACGCACTATAAATTCAAGATCACATATAACCAAGAAACTTAAGCCATTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAACTCAAAAAACTGGTGAAGTTTCCAGGGCACCAGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCGGCAGTTCCTGCTCCTGATCTGCTCAAGAAGTCAGGTGGGCCTGGTTCAGTCGGGAATAAACCTGAGAAAGTACAACTGATTGATCATAGGCGAGCTTACAATTGTGAAATCATGCTTTCAAAGGTTAAGGTGCCTTTGCAAGATTTAATGAGTTCTGTGCTTGACCTTGAAGATGCAGCGCTGGATATCGATCAGGTTGAGAATCTTATTAAGTTTTGTCCGACAAAGGAGGAAATGGATTTACTCAAGGGCTACACCGGAGAAAAGGAGAAGCTTGGAAAATGTGAACAGTTCTTCTTAGAGTTGATGCAAGTACCTCGTGTTGAATGTAAACTTCGAGTTTTCTCATTCAAGATGCAGTTCAGCTGTCAGGTCACTGACCTCAAAAAAAGCTTGAACTTTGTTAACTCTGCTGCAGAAGAGATAAAAAGTTCAGTGAAGTTGAAGAGAGTCATGCAAACAATACTATCTCTAGGAAATGCTTTAAACCAGGGAACAGCGAGGGGCTCTGCTATAGGATTTAGGCTGGATAGCCTTCTTAAACTGACAGAAACGCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTTGCTGACAAACTGCCAGAAGTTTTGGATTTTTCTAATGATCTTGCAAGCTTGGAGCCTGCATCAAAGGTACAATTGAAGATTTTGGCAGAGGAGATGCAAGCAATTAGCAAAGGGTTGGAGAAAATAGTTCAAGAATTGTCTACATCTGAAAATGATGGCCCTATATCCAATAATTTCCGAATGGTTTTAAAGGAGTTCCTCCGTTTTGCTGAAGCTGAAGTCAGAACTCTGGCTTCACTATACTCTAGCGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTTGGAGAAGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACCTTATGCAACTTTGTGAGTATGTTTAACCGAGCGCACGAGGAAAACTGCAAGCAGATAGAGCTTGAATTGAAGAAAGCAACTGAAAAGGAAAAATCAAAGACGGGGCACGTGCACAAAAAGACGAGGACGAAGAAGTTATCACGCTCCCAGGTCGAGATTGGCAATGTCAAGTAA 3681 42.38 MALLRKLFFRKPPDGLLEICERVYVFDCCFTTDSWKEKNYEAYLCGIVAQLREHLADASFLVFNFRRLEMQSQMGDILSKYDMTIMDYPQQYEGCPVLTMEVLHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIFRKQYSGEQRTLDMVYRQAPRELLHVLSPMNPVPSQLRYLQYIARRNVALEWPPMDRALTLDCIILRFIPNVDGEGGCRPIFRIYGQDPLLVSDRAPKVLYSTPKRSKNVRSYKQVESELVKIDINCHIQGDVVLECISLHDDMESEEMMFRAMFNTAFIRSNILIVNREEIDTLWNAKDKFPKEFRAEILFSEMDAGTSTVPNDILCIEEDGLPIEAFAKVQEIFSHVDWLDPKADVALNMLHQMNALNIAQEKTDNNSLWSTQFSSLLQCTSPRKLPQKFTLENKLFLEKEESVPTSKFSPDAAKTEQNNEPDSVFQQVPRSSGSFPLNYDILQDSRNSERSNRTSHSASVGSHSFLDSEGETEVSHLKTASSSFLNAALAVSLAPESLRTKSFLTGTTMPPPPPLPQLSMDISVANSVAYPPPPTASALPSNNLSTLGPDKSSLTEERKIYSKDQSQLSTIGPPLSVTSAIASLVPQPPPPLCTSTVNHTISSPVPLPPPPPPPPLPMTSKQDESTSTSPFVPPPPPPPLLMTSMQFGSTSTSSSVPPPPPPLPFRPVEYTSTSSSVPPPPPPLPFRPVEYTSTSPSVPPPPPPPTSTTGSSSAVPSAPPPPTLSGRGTSKSGELCSDSLLENGLSRCPPPPNSYPLGIKGRSLSRTINSRSHITKKLKPLHWLKLSKAVQGSLWAETQKTGEVSRAPEIDMSELESLFSAAVPAPDLLKKSGGPGSVGNKPEKVQLIDHRRAYNCEIMLSKVKVPLQDLMSSVLDLEDAALDIDQVENLIKFCPTKEEMDLLKGYTGEKEKLGKCEQFFLELMQVPRVECKLRVFSFKMQFSCQVTDLKKSLNFVNSAAEEIKSSVKLKRVMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSNDLASLEPASKVQLKILAEEMQAISKGLEKIVQELSTSENDGPISNNFRMVLKEFLRFAEAEVRTLASLYSSVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVSMFNRAHEENCKQIELELKKATEKEKSKTGHVHKKTRTKKLSRSQVEIGNVK 1226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2257120 2267545 + CmoCh10G005050.1 Cmo10g00505 389851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00505 1226 MobiDBLite consensus disorder prediction 639 655 - -
Cmo10g00505 1226 Gene3D Formin, FH2 domain 802 1188 IPR042201 -
Cmo10g00505 1226 MobiDBLite consensus disorder prediction 444 481 - -
Cmo10g00505 1226 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Cmo10g00505 1226 SMART PTEN_C2_2 197 337 IPR014020 -
Cmo10g00505 1226 Pfam Formin Homology 2 Domain 811 1178 IPR015425 -
Cmo10g00505 1226 MobiDBLite consensus disorder prediction 438 503 - -
Cmo10g00505 1226 MobiDBLite consensus disorder prediction 488 503 - -
Cmo10g00505 1226 MobiDBLite consensus disorder prediction 569 608 - -
Cmo10g00505 1226 Gene3D - 200 340 - -
Cmo10g00505 1226 SMART it6_source 804 1226 IPR015425 -
Cmo10g00505 1226 Coils Coil 1178 1198 - -
Cmo10g00505 1226 MobiDBLite consensus disorder prediction 1196 1226 - -
Cmo10g00505 1226 MobiDBLite consensus disorder prediction 710 759 - -
Cmo10g00505 1226 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 186 IPR029021 -
Cmo10g00505 1226 MobiDBLite consensus disorder prediction 628 796 - -
Cmo10g00505 1226 MobiDBLite consensus disorder prediction 760 775 - -
Cmo10g00505 1226 Gene3D Protein tyrosine phosphatase superfamily 15 199 IPR029021 -
Cmo10g00505 1226 ProSiteProfiles Formin homology-2 (FH2) domain profile. 804 1203 IPR015425 -
Cmo10g00505 1226 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Cmo10g00505 1226 PANTHER FORMIN-J 1 1211 - -
Cmo10g00505 1226 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Cmo10g00505 1226 SUPERFAMILY Formin homology 2 domain (FH2 domain) 878 1198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01711 Cmo-Chr1:12844168 Cmo10g00505 Cmo-Chr10:2257120 0 dispersed
Cmo10g00505 Cmo-Chr10:2257120 Cmo11g00189 Cmo-Chr11:923749 1.58E-08 dispersed
Cmo10g00505 Cmo-Chr10:2257120 Cmo11g00464 Cmo-Chr11:2265801 0 wgd
Cmo10g00505 Cmo-Chr10:2257120 Cmo09g00417 Cmo-Chr9:1825147 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00505 - - cmax:111485750 2189.85