Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00509 ATGGCGGAGAAGGACAGAGACGGTCATTCTGGTGTGCTCCATGGGAAGTATGAGTTAGGTCGGCTTCTAGGGCATGGAACTTTTGCTAAGGTTTACCATGCCCGGAACTTGCAGACTGGGACGAACATGGCGATGAAGGTTGTTGGGAAGGAGAAGGTCATAAAAGTAGGTATGATGGAGCAGATCAAGAGAGAGATCTCTGTGATGAAGATGGTGAAGCATCCGAATATTGTCGAGCTTCATGAGGTTATGGCGAGCAAATCGAAGATCTATTTCGCTATGGAGCTTGTTCGAGGCGGGGAACTGTTTTCCAAAATTGCTAGAGGTCGATTGAGAGAGGATGTGGCTAGAGTTTACTTTCAGCAGCTGATTTCTGCGATCGATTTCTGCCACAGTCGGGGGGTTTACCATCGCGACCTCAAACCGGAGAATCTTCTTCTCGACGACGACGGAAATCTTAAGGTAACTGATTTTGGACTCAGCGCATTTTCAGAGCACTTGAAACAGGATGGATTGTTGCACACAACTTGTGGTACGCCAGCCTACGTTGCGCCGGAGGTTATCGGGAAGAACGGATACAACGGCGCCAAAGCCGATCTGTGGTCATGTGGAGTCATCCTTTACGTTCTTCTCGCAGGATTTCTCCCATTTCAGGACGACAATATTATGGCCATGTACAGGAAGATTTACAAGGGAGACTTCAAATGCCCGCCGTGGTTCTCATCGGATGCCCGTCGACTAATCACCAAACTCCTCGATCCAAATCCGAATACCAGAATTACAACTTCGAAGATCATGGAGTCGTCCTGGTTCAGGAAATCTGTACCAAGAACTGTGAAAACGAAAGAGGAGCAGGAATTCGACGAGAGCACCGAGAAACTAAAGCAATCTGAGACTCTGAATGCATTCCACATAATTTCGTTATCAGAAGGGTTCGATTTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAAGAAAAAGAGGAGCTGAGATTTGCGACGACGAGGCCGGCAAGCAGTGTGATATCGAAGCTGGAGGAGGTCGCGAAAGCGGGGAAATTCAGCGTCAAAAAGAGCGAATCGAGAGTCAGACTACAGGGCCAGGAGTGCGGAAGAAAAGGGAAACTGGCGGTGGCTGCGGAGATCTTCGCCTTGACGCCGTCGTTTCTGGTGGTGGAGGTGAAGAAGGATCATGGCGACACCCTCGAATACAACCAATTCTGCAGCAAAGAGCTCCGGCCGGCACTCAAAGACATTGTCTGGACATCACCGACGGAGAACTCCATGCCGGCTTGA 1293 49.65 MAEKDRDGHSGVLHGKYELGRLLGHGTFAKVYHARNLQTGTNMAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKIARGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKNGYNGAKADLWSCGVILYVLLAGFLPFQDDNIMAMYRKIYKGDFKCPPWFSSDARRLITKLLDPNPNTRITTSKIMESSWFRKSVPRTVKTKEEQEFDESTEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTRPASSVISKLEEVAKAGKFSVKKSESRVRLQGQECGRKGKLAVAAEIFALTPSFLVVEVKKDHGDTLEYNQFCSKELRPALKDIVWTSPTENSMPA 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2286667 2287959 + CmoCh10G005090.1 Cmo10g00509 389855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00509 430 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524
Cmo10g00509 430 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 428 - -
Cmo10g00509 430 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00509 430 Gene3D Kinase associated domain 1, KA1 295 421 - -
Cmo10g00509 430 CDD STKc_SnRK3 16 270 - -
Cmo10g00509 430 Pfam NAF domain 298 357 IPR004041 GO:0007165
Cmo10g00509 430 Gene3D Phosphorylase Kinase; domain 1 14 98 - -
Cmo10g00509 430 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165
Cmo10g00509 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Cmo10g00509 430 SUPERFAMILY Protein kinase-like (PK-like) 13 285 IPR011009 -
Cmo10g00509 430 CDD CIPK_C 301 416 - -
Cmo10g00509 430 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00509 430 Coils Coil 280 300 - -
Cmo10g00509 430 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00509 430 PANTHER - 8 428 - -
Cmo10g00509 430 Gene3D Transferase(Phosphotransferase) domain 1 99 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01262 Cmo-Chr5:9803375 Cmo10g00509 Cmo-Chr10:2286667 0 dispersed
Cmo10g00509 Cmo-Chr10:2286667 Cmo12g01173 Cmo-Chr12:10616139 0 dispersed
Cmo14g01072 Cmo-Chr14:5903459 Cmo10g00509 Cmo-Chr10:2286667 9.13E-170 dispersed
Cmo10g00509 Cmo-Chr10:2286667 Cmo11g00466 Cmo-Chr11:2282701 0 wgd
Cmo10g00509 Cmo-Chr10:2286667 Cmo09g00419 Cmo-Chr9:1843227 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74611 PF00069 Pkinase 1.90E-73 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00509 - K07198 csv:101211847 818.535