Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00510 ATGAAACAGGAGTTGTTAAGTATGATGTTAAAAGCCAGGACGAATGCAATTGGGGAAGATTGCATCACTCTCCCATTCCCTGCCAGTGAATGTAGTAGACAAGGAAAGAGTTTAACCTCAAAATTCAAAGGTGTTGTGCTTCAGCAGAATGGCCACTGGGGTGCTCAAATTTATGCTAATCACCATCGTATTTGGCTCGGAACATTCAAGTCGGAAGACGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGGAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAATTCACAATTGAAGAGCCTAACTTCCAGAATCTTTACACTACAGAAGCTTTGCTTAGTATGTTAAAAGACGGTTCTTACAGAACTAAATTTGCTGAGTATTTGAGGGATTGTTTGGAAAGCGTACAAACAGCTAGTCCCTCTGCAGAAAAGCTACATGACAATGGACGGACATCTATTAAGCAACTTTTTCAAAAGGAGCTAACACCGAGCGATGTTGGTAAGTTAAATAGATTGGTCATCCCAAAGAAATACGCTGTTAAATACTTCCCTCAAATACCAGCTAGCACGATAGATAACGTGAAACGTGTTGATGATGATTGTGATGTGCAGCTAGTATTTTTTGACAAAATGATGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTACGTTTTTACGCGAGGTTGGAATCGGTTTGTGAAAGAAAAACAACTGAAAGCTAATGACACAATAGCTTTCTACTTGTGTGAAGCAGCAAAGGCAAGCGATGCTAACACTACATTCTGTGTGGTGGATGTTAAAAACCGCAACAGCTATAGCTTGACTGAGAATGAAATCACAAGCAGCGAAATGCAGCTAGATTTGAGTCGTGAAGAAGTTAATGGACCGGTGTCGCCTAAGCATGTCGACGATGAACTAAAAGATGATCTTGAAGTCTCAGGCTTCAAACTGTTTGGAGTGCATATTAAGGGAAAGTTCGCGGGTCAATGTTTTTCCCTGCCCCGATCGGCAGCAACTGGCATTCAACAAGTTTCTGATACCCTGTCAAATTCAAAGAATTCATTTTATGAAGCAGAAACTCCAAAAAGCAGCATGGCTCCACTGGCTGCTTGCCTTATTGGTAGGTGGACAATAAAGAGACTTCAAGGGAGTGCTAAACGAAGTCTACGTTCATGTTCATGCCAATTTGAACCAAACTCAACCGTGCAAATAATTGTTCATTGCGGTTTTTGTTGGGAAGGGGAAAAAGGGCCCAAAATTAGGGAGAATTTTGGTGAAGGATTACAACAATTATATGCACATTACATGATCTGA 1344 41.15 MKQELLSMMLKARTNAIGEDCITLPFPASECSRQGKSLTSKFKGVVLQQNGHWGAQIYANHHRIWLGTFKSEDEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQNLYTTEALLSMLKDGSYRTKFAEYLRDCLESVQTASPSAEKLHDNGRTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPQIPASTIDNVKRVDDDCDVQLVFFDKMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKASDANTTFCVVDVKNRNSYSLTENEITSSEMQLDLSREEVNGPVSPKHVDDELKDDLEVSGFKLFGVHIKGKFAGQCFSLPRSAATGIQQVSDTLSNSKNSFYEAETPKSSMAPLAACLIGRWTIKRLQGSAKRSLRSCSCQFEPNSTVQIIVHCGFCWEGEKGPKIRENFGEGLQQLYAHYMI 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2288074 2291730 - CmoCh10G005100.1 Cmo10g00510 389856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00510 447 PANTHER DNA-BINDING PROTEIN RAV1 1 332 - -
Cmo10g00510 447 SUPERFAMILY DNA-binding domain 40 97 IPR016177 GO:0003677
Cmo10g00510 447 ProSiteProfiles B3 DNA-binding domain profile. 162 279 IPR003340 GO:0003677
Cmo10g00510 447 Pfam B3 DNA binding domain 162 261 IPR003340 GO:0003677
Cmo10g00510 447 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 332 IPR044800 GO:0003700
Cmo10g00510 447 CDD AP2 40 98 IPR001471 GO:0003700|GO:0006355
Cmo10g00510 447 Pfam AP2 domain 40 87 IPR001471 GO:0003700|GO:0006355
Cmo10g00510 447 Gene3D - 157 287 IPR015300 -
Cmo10g00510 447 SUPERFAMILY DNA-binding pseudobarrel domain 161 261 IPR015300 -
Cmo10g00510 447 CDD B3_DNA 161 273 IPR003340 GO:0003677
Cmo10g00510 447 SMART rav1_2 41 102 IPR001471 GO:0003700|GO:0006355
Cmo10g00510 447 SMART B3_2 162 277 IPR003340 GO:0003677
Cmo10g00510 447 ProSiteProfiles AP2/ERF domain profile. 41 96 IPR001471 GO:0003700|GO:0006355
Cmo10g00510 447 Gene3D AP2/ERF domain 40 97 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00510 Cmo-Chr10:2288074 Cmo11g00834 Cmo-Chr11:4237476 2.66E-97 dispersed
Cmo10g00510 Cmo-Chr10:2288074 Cmo11g00467 Cmo-Chr11:2286432 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10460 PF02362 B3 2.40E-24 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00510 K09287 - csv:101212246 552.747