Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00511 ATGCAGCCCTGTAGCAGAGAAATGCAAACCTTCAACTCTCTCTTAAACCACTCCCAAATCTCTCTCCAGGACCTCCACGCCGACGCTCCCCACCATTTGAATCCCCCACCGCCGCAGATCCCGGCGTCTCAGCTCCACCATTTTGATCCCGCCGCTGCCGCCTCCCACGACGACTTCCTCGAGCAAATGCTCAACACAATCCCCTCCTGTTCCTGGCCCGACCTCAACCCTTCAAACCCTAAATCCCCTTGGGACCTTAACCCCATCAATAAGCCGTCAAGAGATATCTCCGACGACCACCACCAGAGCCACATCACTGCTACATCTCCGGCTGCCAAGGCCGCCGTCATGCTCCAGCAACAGCTTCTCTTGAACAGAGGAATCTCCGTCTCCGCTGGAAATGGCGTCGCTGACCATGGTCTCCCACCTATGCCTCTCTCCCTCGGAAATGCCGACTTAGACCGCTCCCAAAACGACGTCGTCGAGGGATCCTGCTTCCGCACACCGAACTCGGGAGGTTCCATTCAATCGCATAGCTTCGGAGCTCCAGGGAACGGGATGAGTCAAACTCCGGCCGGTGGTTCAGTCGGAGTTTCTCCATCTCAGCCGAAGCAGAAAGTCAGAGCTCGCAGAGGCCAAGCCACAGACCCACACAGTATCGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCACTGCAAGAACTCGTTCCCAACGCAAACAAGGTCAGTTTCACAGATAAGGCTTCAATGCTGGATGAGATCATCGACTACGTTAAATTCCTCCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGGTTGGGAGGTGCAGCAGCTGTGGCTCCTCTCGTTGCTGACGTGTCATCTGAGGGAGGTGGTGAGTGTATGCAAGGGAGTGGGGCCCAAGGTGGTGGTCGGAATTCGAACAATGGCGGGGGTGGTGGAAACCAAACGGCGTCGTCGAATGATAGCATGACGGTGACGGAGCAGCAGGTGGCGAAGCTGATGGAGAAGGATATGGGATCGGCGATGCAGTATCTGCAGGGGAAAGGGTTGTGTCTTATGCCGATCTCTCTGGCGACGGCGATTTCGACATCCACTTGTCACACTAGGAATCCGATGATGAACGGCGGTGGTCAGCATCCGGTGATGGGGACGAATGGAGAAGGGCCGACGTCGCCAAGCATGTCAGTGCTGACGGTGCAGTCGACGAGCATGGGGAACGGCTCCGTTAAGGATGCCGCCTCCGTATCGAAGCCGTGA 1272 56.29 MQPCSREMQTFNSLLNHSQISLQDLHADAPHHLNPPPPQIPASQLHHFDPAAAASHDDFLEQMLNTIPSCSWPDLNPSNPKSPWDLNPINKPSRDISDDHHQSHITATSPAAKAAVMLQQQLLLNRGISVSAGNGVADHGLPPMPLSLGNADLDRSQNDVVEGSCFRTPNSGGSIQSHSFGAPGNGMSQTPAGGSVGVSPSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKVSFTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQGGGRNSNNGGGGGNQTASSNDSMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHTRNPMMNGGGQHPVMGTNGEGPTSPSMSVLTVQSTSMGNGSVKDAASVSKP 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2307147 2309994 - CmoCh10G005110.1 Cmo10g00511 389857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00511 423 MobiDBLite consensus disorder prediction 379 402 - -
Cmo10g00511 423 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 47 379 - -
Cmo10g00511 423 MobiDBLite consensus disorder prediction 167 208 - -
Cmo10g00511 423 MobiDBLite consensus disorder prediction 293 331 - -
Cmo10g00511 423 PANTHER TRANSCRIPTION FACTOR BHLH69 47 379 - -
Cmo10g00511 423 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 213 265 IPR011598 GO:0046983
Cmo10g00511 423 Gene3D - 208 273 IPR036638 GO:0046983
Cmo10g00511 423 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 211 276 IPR036638 GO:0046983
Cmo10g00511 423 MobiDBLite consensus disorder prediction 167 216 - -
Cmo10g00511 423 MobiDBLite consensus disorder prediction 304 331 - -
Cmo10g00511 423 SMART finulus 219 271 IPR011598 GO:0046983
Cmo10g00511 423 Pfam Helix-loop-helix DNA-binding domain 218 266 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00511 Cmo12g01174 CCT
Cmo05g01263 Cmo10g00511 CCT
Cmo10g00511 Cmo11g00470 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01263 Cmo-Chr5:9813411 Cmo10g00511 Cmo-Chr10:2307147 1.02E-99 dispersed
Cmo10g00511 Cmo-Chr10:2307147 Cmo12g01174 Cmo-Chr12:10624309 3.99E-108 dispersed
Cmo10g00511 Cmo-Chr10:2307147 Cmo11g00470 Cmo-Chr11:2301693 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10461 PF00010 HLH 1.40E-08 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00511 - - csv:101211609 682.174