Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo10g00511 | ATGCAGCCCTGTAGCAGAGAAATGCAAACCTTCAACTCTCTCTTAAACCACTCCCAAATCTCTCTCCAGGACCTCCACGCCGACGCTCCCCACCATTTGAATCCCCCACCGCCGCAGATCCCGGCGTCTCAGCTCCACCATTTTGATCCCGCCGCTGCCGCCTCCCACGACGACTTCCTCGAGCAAATGCTCAACACAATCCCCTCCTGTTCCTGGCCCGACCTCAACCCTTCAAACCCTAAATCCCCTTGGGACCTTAACCCCATCAATAAGCCGTCAAGAGATATCTCCGACGACCACCACCAGAGCCACATCACTGCTACATCTCCGGCTGCCAAGGCCGCCGTCATGCTCCAGCAACAGCTTCTCTTGAACAGAGGAATCTCCGTCTCCGCTGGAAATGGCGTCGCTGACCATGGTCTCCCACCTATGCCTCTCTCCCTCGGAAATGCCGACTTAGACCGCTCCCAAAACGACGTCGTCGAGGGATCCTGCTTCCGCACACCGAACTCGGGAGGTTCCATTCAATCGCATAGCTTCGGAGCTCCAGGGAACGGGATGAGTCAAACTCCGGCCGGTGGTTCAGTCGGAGTTTCTCCATCTCAGCCGAAGCAGAAAGTCAGAGCTCGCAGAGGCCAAGCCACAGACCCACACAGTATCGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCACTGCAAGAACTCGTTCCCAACGCAAACAAGGTCAGTTTCACAGATAAGGCTTCAATGCTGGATGAGATCATCGACTACGTTAAATTCCTCCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGGTTGGGAGGTGCAGCAGCTGTGGCTCCTCTCGTTGCTGACGTGTCATCTGAGGGAGGTGGTGAGTGTATGCAAGGGAGTGGGGCCCAAGGTGGTGGTCGGAATTCGAACAATGGCGGGGGTGGTGGAAACCAAACGGCGTCGTCGAATGATAGCATGACGGTGACGGAGCAGCAGGTGGCGAAGCTGATGGAGAAGGATATGGGATCGGCGATGCAGTATCTGCAGGGGAAAGGGTTGTGTCTTATGCCGATCTCTCTGGCGACGGCGATTTCGACATCCACTTGTCACACTAGGAATCCGATGATGAACGGCGGTGGTCAGCATCCGGTGATGGGGACGAATGGAGAAGGGCCGACGTCGCCAAGCATGTCAGTGCTGACGGTGCAGTCGACGAGCATGGGGAACGGCTCCGTTAAGGATGCCGCCTCCGTATCGAAGCCGTGA | 1272 | 56.29 | MQPCSREMQTFNSLLNHSQISLQDLHADAPHHLNPPPPQIPASQLHHFDPAAAASHDDFLEQMLNTIPSCSWPDLNPSNPKSPWDLNPINKPSRDISDDHHQSHITATSPAAKAAVMLQQQLLLNRGISVSAGNGVADHGLPPMPLSLGNADLDRSQNDVVEGSCFRTPNSGGSIQSHSFGAPGNGMSQTPAGGSVGVSPSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKVSFTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQGGGRNSNNGGGGGNQTASSNDSMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHTRNPMMNGGGQHPVMGTNGEGPTSPSMSVLTVQSTSMGNGSVKDAASVSKP | 423 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2307147 | 2309994 | - | CmoCh10G005110.1 | Cmo10g00511 | 389857 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo10g00511 | 423 | MobiDBLite | consensus disorder prediction | 379 | 402 | - | - | |
Cmo10g00511 | 423 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 47 | 379 | - | - | |
Cmo10g00511 | 423 | MobiDBLite | consensus disorder prediction | 167 | 208 | - | - | |
Cmo10g00511 | 423 | MobiDBLite | consensus disorder prediction | 293 | 331 | - | - | |
Cmo10g00511 | 423 | PANTHER | TRANSCRIPTION FACTOR BHLH69 | 47 | 379 | - | - | |
Cmo10g00511 | 423 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 213 | 265 | IPR011598 | GO:0046983 | |
Cmo10g00511 | 423 | Gene3D | - | 208 | 273 | IPR036638 | GO:0046983 | |
Cmo10g00511 | 423 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 211 | 276 | IPR036638 | GO:0046983 | |
Cmo10g00511 | 423 | MobiDBLite | consensus disorder prediction | 167 | 216 | - | - | |
Cmo10g00511 | 423 | MobiDBLite | consensus disorder prediction | 304 | 331 | - | - | |
Cmo10g00511 | 423 | SMART | finulus | 219 | 271 | IPR011598 | GO:0046983 | |
Cmo10g00511 | 423 | Pfam | Helix-loop-helix DNA-binding domain | 218 | 266 | IPR011598 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo10g00511 | Cmo12g01174 | CCT | |
Cmo05g01263 | Cmo10g00511 | CCT | |
Cmo10g00511 | Cmo11g00470 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g01263 | Cmo-Chr5:9813411 | Cmo10g00511 | Cmo-Chr10:2307147 | 1.02E-99 | dispersed | |
Cmo10g00511 | Cmo-Chr10:2307147 | Cmo12g01174 | Cmo-Chr12:10624309 | 3.99E-108 | dispersed | |
Cmo10g00511 | Cmo-Chr10:2307147 | Cmo11g00470 | Cmo-Chr11:2301693 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10461 | PF00010 | HLH | 1.40E-08 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo10g00511 | - | - | csv:101211609 | 682.174 |