Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo10g00516 | ATGACCGTGGAGGGTCATTCAGTTGATTCAGCCGGCGATGGTGGCGCCGCCGATCATTTTCCTGTTGGGATGCGGGTTCTGGCTGTCGATGATGATCCCATTTGTCTTAAAGTGCTCGAGCATCTCCTTCGGAAATGCCAATATCATGTCACCACGACGAAGAGGTCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAAAGTGGATTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGGTTCAAGCTTCTTGAGTTGGTGGGGCTTGAGATGGACCTACCTGTGATCATGTTATCAGCACATAGTGATACTGAGCTTGTGATGAAGGGGATTGCGCACGGTGCGTGCGACTATCTGTTGAAACCAGTTCGAATCGAGGAGTTGAAGAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTCGAACCGAAGACAAAAAACAAGCTCCCTAATCAAGATAACATTGGAAATGGAGGCAGTGAAGGTGAACAAGGTTTCTCATTAACCAGTAATGCGGACAATGCAAAACTCAACAGGAAACGAAAGGAACAAGACGATGATGAGGATGAAGAAGGAAAAGAGAACGAGGTTGATATCGACGACCCTTCGAACCTTAAGAGGCCTAGGGTAGTATGGTCGGTTGAGTTGCACCGGAAGTTCGTTTCGGCAGTTAATCAGTTGGGTCTTGAAAAAGCCGTGCCGAAAAAAATTCTGGATCTGATGAATGTTGAAGGGCTTACTAGAGAAAATGTGGCTAGTCATTTGCAGAAATATAGGCTTTACCTGAAAAGAATCAGCAATGTGGCATCTCAACAAGCTAACATGGCTGCAACATTTGGGAGTAAAGAAGGCACTTACATGCGCATAGGTTCATATGATGGCTATGGAGATATGCATGGCTTTGCAGGATCAGGGTGGCTTCCAAGCTCTTCATTATCTTATTATTCACCTGTTGGAATGAGCCTGATCCAACAAAGCTCCCATAATTTGAACTGTGCTATCAGTAATCTTGGGAGCTTCCAACCAGCTATTATGTTGCCTTCTCATCAAGCTACTAATCTATTGCAAGGGATTCCGACGTCACTCGAGCTCGGCCATTTGCAGCACAGCAAGTCCACCACTTCCATTGGAGAAGCTTTTGACATAGACTTCGGCTGTTCGAGTTTTTTGGATCCTGATCCTTCTAATGGAAACTGGCAGGGAGCAGCACAATTGTTGAGATTCTCAGCAACTTTGAACCCGAATGAGGAGTATCCCATTGATCAAATGCATGCAATGAACTCGAGCATTTCCTCTGCCCCCTCAACGAACAGGAACATCTCGGTTGTTGGATCAGTTTCAGCTCCCTTGCTGGATTCAAGAGACCTGCGATGCCAGGCAGGGGTAGGGGTGGTTGACAGTATGCCAAAGCAGAGTTGGGAAGAGCACGAACACGAATACGCTCGATCCCCCTTAAGCCAGCGTTTCAATCAGAATAGTCTAGTTTGTGAGAGAAAGGTTGGTTCGTCTTTGATAGTCCCATCAAATGATGCTCAACTATCCTTCCCTCAGCACAGTGTGGTTGAAAAATTGGGTCCTAACACAAAGATGAATGCAGATAGAAACTTACACGATGGATCGATTCAAGGAAGTATCGAGTCCTTGGATGATATAATGAACGCGATGATCAAACAGGTTCCATCTTTGTCTGCTCATCCATTTACTGATGCAAAACATATGGATAACGAAACAGCAGACTACACACTCCTTATCCTTGTGTTCATAAGATAA | 1782 | 45.06 | MTVEGHSVDSAGDGGAADHFPVGMRVLAVDDDPICLKVLEHLLRKCQYHVTTTKRSIEALKMLRENRNKVDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKTKNKLPNQDNIGNGGSEGEQGFSLTSNADNAKLNRKRKEQDDDEDEEGKENEVDIDDPSNLKRPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKRISNVASQQANMAATFGSKEGTYMRIGSYDGYGDMHGFAGSGWLPSSSLSYYSPVGMSLIQQSSHNLNCAISNLGSFQPAIMLPSHQATNLLQGIPTSLELGHLQHSKSTTSIGEAFDIDFGCSSFLDPDPSNGNWQGAAQLLRFSATLNPNEEYPIDQMHAMNSSISSAPSTNRNISVVGSVSAPLLDSRDLRCQAGVGVVDSMPKQSWEEHEHEYARSPLSQRFNQNSLVCERKVGSSLIVPSNDAQLSFPQHSVVEKLGPNTKMNADRNLHDGSIQGSIESLDDIMNAMIKQVPSLSAHPFTDAKHMDNETADYTLLILVFIR | 593 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2333938 | 2336950 | - | CmoCh10G005160.1 | Cmo10g00516 | 389862 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo10g00516 | 593 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 388 | 567 | - | - | |
Cmo10g00516 | 593 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 1 | 383 | - | - | |
Cmo10g00516 | 593 | MobiDBLite | consensus disorder prediction | 152 | 178 | - | - | |
Cmo10g00516 | 593 | PIRSF | RR_ARR_type-B | 2 | 585 | IPR017053 | GO:0003677|GO:0003700|GO:0009736 | |
Cmo10g00516 | 593 | Pfam | Myb-like DNA-binding domain | 213 | 263 | IPR001005 | - | |
Cmo10g00516 | 593 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 388 | 567 | IPR045279 | GO:0009736 | |
Cmo10g00516 | 593 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 1 | 383 | IPR045279 | GO:0009736 | |
Cmo10g00516 | 593 | ProSiteProfiles | Response regulatory domain profile. | 25 | 140 | IPR001789 | GO:0000160 | |
Cmo10g00516 | 593 | Gene3D | - | 24 | 200 | - | - | |
Cmo10g00516 | 593 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 208 | 267 | IPR017930 | - | |
Cmo10g00516 | 593 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 212 | 264 | IPR006447 | GO:0003677 | |
Cmo10g00516 | 593 | CDD | REC_typeB_ARR-like | 26 | 140 | - | - | |
Cmo10g00516 | 593 | SUPERFAMILY | CheY-like | 23 | 149 | IPR011006 | - | |
Cmo10g00516 | 593 | SMART | REC_2 | 24 | 136 | IPR001789 | GO:0000160 | |
Cmo10g00516 | 593 | MobiDBLite | consensus disorder prediction | 147 | 206 | - | - | |
Cmo10g00516 | 593 | Pfam | Response regulator receiver domain | 26 | 134 | IPR001789 | GO:0000160 | |
Cmo10g00516 | 593 | SUPERFAMILY | Homeodomain-like | 209 | 268 | IPR009057 | - | |
Cmo10g00516 | 593 | Gene3D | - | 208 | 270 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo10g00516 | Cmo11g00476 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo10g00516 | Cmo-Chr10:2333938 | Cmo12g01197 | Cmo-Chr12:10782304 | 8.54E-142 | dispersed | |
Cmo20g00418 | Cmo-Chr20:1984641 | Cmo10g00516 | Cmo-Chr10:2333938 | 2.84E-24 | dispersed | |
Cmo10g00516 | Cmo-Chr10:2333938 | Cmo11g00476 | Cmo-Chr11:2328507 | 0 | wgd | |
Cmo10g00516 | Cmo-Chr10:2333938 | Cmo09g00426 | Cmo-Chr9:1898549 | 3.54E-140 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10462 | PF00072 | Response_reg | 4.10E-25 | CL0304 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo10g00516 | K14491 | - | cmos:111429974 | 1083.55 |