Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00516 ATGACCGTGGAGGGTCATTCAGTTGATTCAGCCGGCGATGGTGGCGCCGCCGATCATTTTCCTGTTGGGATGCGGGTTCTGGCTGTCGATGATGATCCCATTTGTCTTAAAGTGCTCGAGCATCTCCTTCGGAAATGCCAATATCATGTCACCACGACGAAGAGGTCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAAAGTGGATTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGGTTCAAGCTTCTTGAGTTGGTGGGGCTTGAGATGGACCTACCTGTGATCATGTTATCAGCACATAGTGATACTGAGCTTGTGATGAAGGGGATTGCGCACGGTGCGTGCGACTATCTGTTGAAACCAGTTCGAATCGAGGAGTTGAAGAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTCGAACCGAAGACAAAAAACAAGCTCCCTAATCAAGATAACATTGGAAATGGAGGCAGTGAAGGTGAACAAGGTTTCTCATTAACCAGTAATGCGGACAATGCAAAACTCAACAGGAAACGAAAGGAACAAGACGATGATGAGGATGAAGAAGGAAAAGAGAACGAGGTTGATATCGACGACCCTTCGAACCTTAAGAGGCCTAGGGTAGTATGGTCGGTTGAGTTGCACCGGAAGTTCGTTTCGGCAGTTAATCAGTTGGGTCTTGAAAAAGCCGTGCCGAAAAAAATTCTGGATCTGATGAATGTTGAAGGGCTTACTAGAGAAAATGTGGCTAGTCATTTGCAGAAATATAGGCTTTACCTGAAAAGAATCAGCAATGTGGCATCTCAACAAGCTAACATGGCTGCAACATTTGGGAGTAAAGAAGGCACTTACATGCGCATAGGTTCATATGATGGCTATGGAGATATGCATGGCTTTGCAGGATCAGGGTGGCTTCCAAGCTCTTCATTATCTTATTATTCACCTGTTGGAATGAGCCTGATCCAACAAAGCTCCCATAATTTGAACTGTGCTATCAGTAATCTTGGGAGCTTCCAACCAGCTATTATGTTGCCTTCTCATCAAGCTACTAATCTATTGCAAGGGATTCCGACGTCACTCGAGCTCGGCCATTTGCAGCACAGCAAGTCCACCACTTCCATTGGAGAAGCTTTTGACATAGACTTCGGCTGTTCGAGTTTTTTGGATCCTGATCCTTCTAATGGAAACTGGCAGGGAGCAGCACAATTGTTGAGATTCTCAGCAACTTTGAACCCGAATGAGGAGTATCCCATTGATCAAATGCATGCAATGAACTCGAGCATTTCCTCTGCCCCCTCAACGAACAGGAACATCTCGGTTGTTGGATCAGTTTCAGCTCCCTTGCTGGATTCAAGAGACCTGCGATGCCAGGCAGGGGTAGGGGTGGTTGACAGTATGCCAAAGCAGAGTTGGGAAGAGCACGAACACGAATACGCTCGATCCCCCTTAAGCCAGCGTTTCAATCAGAATAGTCTAGTTTGTGAGAGAAAGGTTGGTTCGTCTTTGATAGTCCCATCAAATGATGCTCAACTATCCTTCCCTCAGCACAGTGTGGTTGAAAAATTGGGTCCTAACACAAAGATGAATGCAGATAGAAACTTACACGATGGATCGATTCAAGGAAGTATCGAGTCCTTGGATGATATAATGAACGCGATGATCAAACAGGTTCCATCTTTGTCTGCTCATCCATTTACTGATGCAAAACATATGGATAACGAAACAGCAGACTACACACTCCTTATCCTTGTGTTCATAAGATAA 1782 45.06 MTVEGHSVDSAGDGGAADHFPVGMRVLAVDDDPICLKVLEHLLRKCQYHVTTTKRSIEALKMLRENRNKVDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKTKNKLPNQDNIGNGGSEGEQGFSLTSNADNAKLNRKRKEQDDDEDEEGKENEVDIDDPSNLKRPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKRISNVASQQANMAATFGSKEGTYMRIGSYDGYGDMHGFAGSGWLPSSSLSYYSPVGMSLIQQSSHNLNCAISNLGSFQPAIMLPSHQATNLLQGIPTSLELGHLQHSKSTTSIGEAFDIDFGCSSFLDPDPSNGNWQGAAQLLRFSATLNPNEEYPIDQMHAMNSSISSAPSTNRNISVVGSVSAPLLDSRDLRCQAGVGVVDSMPKQSWEEHEHEYARSPLSQRFNQNSLVCERKVGSSLIVPSNDAQLSFPQHSVVEKLGPNTKMNADRNLHDGSIQGSIESLDDIMNAMIKQVPSLSAHPFTDAKHMDNETADYTLLILVFIR 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2333938 2336950 - CmoCh10G005160.1 Cmo10g00516 389862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00516 593 PANTHER TWO-COMPONENT RESPONSE REGULATOR 388 567 - -
Cmo10g00516 593 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 383 - -
Cmo10g00516 593 MobiDBLite consensus disorder prediction 152 178 - -
Cmo10g00516 593 PIRSF RR_ARR_type-B 2 585 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cmo10g00516 593 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Cmo10g00516 593 PANTHER TWO-COMPONENT RESPONSE REGULATOR 388 567 IPR045279 GO:0009736
Cmo10g00516 593 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 383 IPR045279 GO:0009736
Cmo10g00516 593 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Cmo10g00516 593 Gene3D - 24 200 - -
Cmo10g00516 593 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Cmo10g00516 593 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 212 264 IPR006447 GO:0003677
Cmo10g00516 593 CDD REC_typeB_ARR-like 26 140 - -
Cmo10g00516 593 SUPERFAMILY CheY-like 23 149 IPR011006 -
Cmo10g00516 593 SMART REC_2 24 136 IPR001789 GO:0000160
Cmo10g00516 593 MobiDBLite consensus disorder prediction 147 206 - -
Cmo10g00516 593 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Cmo10g00516 593 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Cmo10g00516 593 Gene3D - 208 270 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00516 Cmo11g00476 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00516 Cmo-Chr10:2333938 Cmo12g01197 Cmo-Chr12:10782304 8.54E-142 dispersed
Cmo20g00418 Cmo-Chr20:1984641 Cmo10g00516 Cmo-Chr10:2333938 2.84E-24 dispersed
Cmo10g00516 Cmo-Chr10:2333938 Cmo11g00476 Cmo-Chr11:2328507 0 wgd
Cmo10g00516 Cmo-Chr10:2333938 Cmo09g00426 Cmo-Chr9:1898549 3.54E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10462 PF00072 Response_reg 4.10E-25 CL0304 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00516 K14491 - cmos:111429974 1083.55