Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo10g00518 | ATGAACAAAATGCTACATGCTCATTGCCACATCCGCCAACCTGTTACTGGAACAGCCCGTAGGGTCTGGGAAGCCACAGAAGCTATGGGCGATATTTCGTTGGAAGATGTCAAGAATGAGAACGTTGATCTAGAACGGATTCCTGTGGAGGAAGTTTTTGAGAAACTAAAGTGCACTGAAGAAGGATTGAGCACAGCAGAAGGAGAAAAGAGACTCCAAATTTTTGGTCCCAACAAGCTTGAAGAGAAAAAAGAGAGCAAGGTTTTGAAGTTCTTGGGGTTTATGTGGAATCCTCTATCATGGGTTATGGAATCTGCGGCAATCATGGCCATTGCCCTGGCTAATGGAGGGGGGAAACCACCGGATTGGCAAGATTTTGTTGGGATTATTGTGTTGTTGATCATTAACTCTACCATTAGTTTCATTGAAGAGAACAATGCTGGAAATGCAGCTGCTGCTCTCATGGCTGGTCTGGCCCCCAAAACCAAGGTTCTAAGAGATGGAAAGTGGAAAGAAGAGGAGGCAGCAATTCTGGTTCCAGGGGATGTGATTAGCGTTAAATTAGGAGATATTATCCCGGCCGATGCACGTCTCTTAGAAGGCGATCCTCTGAAGATCGACCAGTCTGCTCTTACGGGTGAATCTTTGCCTGTCACCAAGAATCCTGGTGATGGAGTGTTCTCTGGCTCCACCTGCAAGCAAGGAGAGATCGAGGCCGTTGTTATTGCCACTGGAGTGCATACCTTTTTCGGGAAGGCAGCTCATCTTGTGGACAGCACCAACCAAGTTGGTCATTTCCAAAAGGTGTTGACGGCCATTGGAAACTTCTGTATATGCTCGATCGCGGTCGGGATGGTCATTGAGATTCTAGTAATGTTTGCTATCCAGCACAGAGCATACAGAGAGGGCATTGACAACTTGTTGGTGCTTCTCATTGGAGGCATTCCCATTGCAATGCCAACAGTTCTTTCAGTAACCATGGCCATCGGATCGCATCGCCTTTCGCAGCAAGGTGCCATCACCAAGAGGATGACAGCCATTGAAGAGATGGCTGGAATGGATGTCCTGTGCAGTGACAAGACAGGAACTCTCACCCTCAACAAGCTCACAGTAGACAAGTCCCTGATTGAGGTGTTTGTACCAAACATGGACAAGGACGCTGTCATGCTGTTTGCTGCAAGAGCGTCGAGAGTCGAAAATCAAGACGCCATCGATGCCTGCATTGTTGGAATGTTGGATGACCCCAAAGAGGCAAGAGCAGGAATAACTGAGGTGCATTTCTTGCCGTTTAACCCGGTCGATAAACGTACTGCCATTACCTACATCGACACAGATGGTAACTGGCACAGAAGCAGCAAGGGCGCTCCTGAACAGATCATTGACCTTTGTGACCTTAAAGGTGAAGCAAGGCAGAAAGCTCATACCATTATCGATAACTACGCTAATCGCGGTCTTCGTTCGTTGGCCGTTGGTCGACAGACTGTTAAAGACAAGGACAAGGAAAGTGCTGGAGAACCATGGGAATTTGTTGGTCTCTTGCCTCTATTTGATCCTCCAAGGCATGACAGTGCAGAAACCATTCGCCGAGCTCTAGAACTTGGTGTTAATGTTAAGATGATCACTGGTGACCAACTTGCAATAGGGAAAGAAACCGGTCGGAGGCTCGGCATGGGCACGAACATGTATCCGTCGTCGTCTTTGCTCGGGCAAAGCATGGATGAGACAATTGCTTCTATTCCTGTTGATGAACTCATTGAGAAGGCTGATGGGTTTGCAGGAGTCTTCCCGGAACACAAGTATGAGATTGTTAAGAGACTTCAGGAGAGGAAACATATTTGTGGCATGACAGGAGATGGTGTCAATGATGCTCCTGCTCTCAAGAGGGCCGACATCGGTATCGCTGTGGCTGATGCAACCGACGCAGCACGAAGCGCATCAGACATTGTCTTGACCGAGCCAGGACTAAGTGTGATTGTGAGTGCTGTGTTAACCAGTAGAGCCATCTTTCAAAGAATGAAAAACTACACTATCTATGCAGTATCCATTACTATACGTATTGTGTTGGGATTCATGCTTGTTGCTCTCATCTGGAAGTTTGATTTCTCGCCTTTTATGGTCCTTATCATTGCCATCCTAAACGATGGAACCATCATGACCATTTCAAAGGATAGGGTGAAGCCGTCACCTGTGCCTGACTCATGGAGACTCAAAGAGATTTTTGCTACTGGTGTTGTCCTTGGAACATACATGGCCTTCACTACCGTGTTTTTCTTCTGGCTCACCAACGAAACCGTCTTCTTCCCGAAAACATTTGGTGTAAAGCCACTCAAAGATCTTGCTGAGATGAACTCTGCTCTCTATCTTCAAGTGAGCATTATCAGTCAAGCTCTCATCTTTGTCACCAGGTCAAGAAGTTGGTCCTTTGTTGAATGCCCTGGTTTCTTGCTAGTTATTGCCTTCCTTGCTGCACAGTTGGTTGCCACTCTAATTGCTGTATACTCCAAATGGGACTTTGCAAGGATCAAAGGCATTGGGTGGGGATGGGCAGGAGCCATCTGGTTATTCAGTATTGTCACTTACTTCCCACTTGATGTCCTCAAATTTGCAATCCGTTATGGCCTCAGCGGCAAGGCCTGGGACAACATGCTCGAGAATAAGACTGCGTTTACGACGAAGAAGGATTACGGAAAAGGCGAAAGAGAGGCACAGTGGGCAATAACACAACGTACAAGGCATGGCCTGCAGCCACCAGAAACCATATTTCATGAAAAGAGCAGCTACGAGGAACTTTCAGCCATAGCAGAGCAAGCCAAGAAAAGAGCTGAAATTGCCAGGCTGAGGGAACTCCACACTTTGAAGGGCCATGTAGAGTCGGTGGTGAAGTTGAAGGGGTTGGACATTGACACTATCCAACAGCACTACACTCTTTGA | 2931 | 47.19 | MNKMLHAHCHIRQPVTGTARRVWEATEAMGDISLEDVKNENVDLERIPVEEVFEKLKCTEEGLSTAEGEKRLQIFGPNKLEEKKESKVLKFLGFMWNPLSWVMESAAIMAIALANGGGKPPDWQDFVGIIVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWKEEEAAILVPGDVISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPGDGVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMVIEILVMFAIQHRAYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFVPNMDKDAVMLFAARASRVENQDAIDACIVGMLDDPKEARAGITEVHFLPFNPVDKRTAITYIDTDGNWHRSSKGAPEQIIDLCDLKGEARQKAHTIIDNYANRGLRSLAVGRQTVKDKDKESAGEPWEFVGLLPLFDPPRHDSAETIRRALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSMDETIASIPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWRLKEIFATGVVLGTYMAFTTVFFFWLTNETVFFPKTFGVKPLKDLAEMNSALYLQVSIISQALIFVTRSRSWSFVECPGFLLVIAFLAAQLVATLIAVYSKWDFARIKGIGWGWAGAIWLFSIVTYFPLDVLKFAIRYGLSGKAWDNMLENKTAFTTKKDYGKGEREAQWAITQRTRHGLQPPETIFHEKSSYEELSAIAEQAKKRAEIARLRELHTLKGHVESVVKLKGLDIDTIQQHYTL | 976 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2345080 | 2350715 | + | CmoCh10G005180.1 | Cmo10g00518 | 389864 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo10g00518 | 976 | Gene3D | - | 354 | 653 | IPR023214 | - | |
Cmo10g00518 | 976 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 359 | 365 | IPR018303 | - | |
Cmo10g00518 | 976 | Gene3D | - | 369 | 516 | IPR023299 | GO:0000166 | |
Cmo10g00518 | 976 | Gene3D | - | 925 | 976 | - | - | |
Cmo10g00518 | 976 | SFLD | p-type atpase | 339 | 668 | IPR044492 | - | |
Cmo10g00518 | 976 | PRINTS | H+-transporting ATPase (proton pump) signature | 588 | 604 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo10g00518 | 976 | PRINTS | H+-transporting ATPase (proton pump) signature | 787 | 808 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo10g00518 | 976 | PRINTS | H+-transporting ATPase (proton pump) signature | 647 | 672 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo10g00518 | 976 | PRINTS | H+-transporting ATPase (proton pump) signature | 473 | 491 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo10g00518 | 976 | PRINTS | H+-transporting ATPase (proton pump) signature | 616 | 632 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo10g00518 | 976 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 591 | 703 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo10g00518 | 976 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 129 | 398 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo10g00518 | 976 | Coils | Coil | 927 | 947 | - | - | |
Cmo10g00518 | 976 | Pfam | E1-E2 ATPase | 159 | 336 | - | - | |
Cmo10g00518 | 976 | Pfam | Cation transporter/ATPase, N-terminus | 47 | 109 | IPR004014 | - | |
Cmo10g00518 | 976 | SUPERFAMILY | Calcium ATPase, transduction domain A | 160 | 257 | IPR008250 | - | |
Cmo10g00518 | 976 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 29 | 956 | - | - | |
Cmo10g00518 | 976 | Pfam | haloacid dehalogenase-like hydrolase | 353 | 630 | - | - | |
Cmo10g00518 | 976 | CDD | P-type_ATPase_H | 62 | 868 | IPR006534 | GO:0008553|GO:0016021|GO:0120029 | |
Cmo10g00518 | 976 | Gene3D | - | 160 | 244 | - | - | |
Cmo10g00518 | 976 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 42 | 872 | IPR023298 | - | |
Cmo10g00518 | 976 | PRINTS | P-type cation-transporting ATPase superfamily signature | 639 | 651 | - | - | |
Cmo10g00518 | 976 | PRINTS | P-type cation-transporting ATPase superfamily signature | 207 | 221 | - | - | |
Cmo10g00518 | 976 | PRINTS | P-type cation-transporting ATPase superfamily signature | 533 | 543 | - | - | |
Cmo10g00518 | 976 | PRINTS | P-type cation-transporting ATPase superfamily signature | 616 | 635 | - | - | |
Cmo10g00518 | 976 | PRINTS | P-type cation-transporting ATPase superfamily signature | 357 | 371 | - | - | |
Cmo10g00518 | 976 | PRINTS | P-type cation-transporting ATPase superfamily signature | 511 | 522 | - | - | |
Cmo10g00518 | 976 | SUPERFAMILY | HAD-like | 353 | 663 | IPR036412 | - | |
Cmo10g00518 | 976 | PANTHER | PLASMA MEMBRANE ATPASE | 29 | 956 | - | - | |
Cmo10g00518 | 976 | SFLD | Haloacid Dehalogenase | 339 | 668 | - | - | |
Cmo10g00518 | 976 | SMART | Cation_ATPase_N_a_2 | 43 | 115 | IPR004014 | - | |
Cmo10g00518 | 976 | Gene3D | - | 122 | 842 | - | - | |
Cmo10g00518 | 976 | TIGRFAM | ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase | 62 | 833 | IPR006534 | GO:0008553|GO:0016021|GO:0120029 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo10g00518 | Cmo-Chr10:2345080 | Cmo14g01395 | Cmo-Chr14:11475025 | 0 | dispersed | |
Cmo10g00518 | Cmo-Chr10:2345080 | Cmo10g00519 | Cmo-Chr10:2351720 | 0 | tandem | |
Cmo11g00483 | Cmo-Chr11:2349074 | Cmo10g00518 | Cmo-Chr10:2345080 | 0 | transposed | |
Cmo11g00484 | Cmo-Chr11:2352375 | Cmo10g00518 | Cmo-Chr10:2345080 | 4.15E-48 | transposed | |
Cmo01g00178 | Cmo-Chr1:777843 | Cmo10g00518 | Cmo-Chr10:2345080 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo10g00518 | K01535 | - | csv:101214655 | 1739.93 |