Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00519 ATGGCCTCTCAAGCTCTCACTGAGTACGAGCGCAAGAGGCTCGAGAACATTCGCCGCAACGATGAAATGATGGCCGCCCTCAAGCTTCAGTCCAAAGCCTCTGAACTCTCTGCTGCCTCCAAGCGTCAAAGGACCATGAACAAAATGCTACATTCTCATTGCCACATCCGCCAACCTGTTACTGGAACAGCCCGTAGGGTCTGGGAAGCCACAGAAGGTATCAACCAACTCTGCTCGGCACTGGTTGTAACCACTCCAGCTCTGCAGGTTTACTCATTTAGCAACCCACAGCCGATCATGGGGTTTCTTGAATCAACTCCCTCGCCTTCTCCATTTCCTATAACTATGGGCGATATTTCGTTGGAAGATGTCAAGAATGAGAACGTTGATCTAGAACGGATTCCTGTGGAGGAAGTTTTTGAGAAGCTAAAGTGCACTAAAGAAGGATTGAGCACAGCAGAAGGAGAAAAGAGGCTCCAAATTTTTGGTCCTAACAAGCTTGAAGAGAAAAAAGAGAGCAAAGTTTTAAAGTTCTTGGGGTTTATGTGGAATCCTCTATCATGGGTTATGGAATCTGCAGCAATCATGGCCATTGCCCTGGCTAATGGAGGGGGGAAACCACCGGATTGGCAAGATTTTGTTGGGATTATTGTGTTGTTGATCATTAACTCTACCATTAGTTTCATTGAAGAGAACAACGCTGGAAATGCAGCTGCTGCTCTCATGGCTGGTCTGGCCCCCAAAACCAAGGTTCTAAGAGATGGAAAGTGGAAAGAAGAGGAGGCAGCAATTCTGGTTCCAGGGGATGTGATTAGCGTTAAATTAGGAGATATTATCCCGGCCGATGCACGTCTCTTAGAAGGCGATCCTCTGAAGATCGACCAGTCTGCTCTTACGGGTGAATCTTTGCCTGTCACCAAGAATCCTGGTGATGGAGTGTTCTCTGGCTCCACCTGCAAGCAAGGTGAGATTGAGGCCGTTGTTATTGCCACTGGAGTGCATACCTTTTTTGGAAAGGCAGCTCATCTTGTGGACAGCACCAACCAAGTTGGTCATTTCCAAAAGGTGTTGACGGCCATTGGAAACTTCTGTATATGCTCGATCGCGGTCGGGATGGTCATTGAGATTCTAGTAATGTTTGCTATCCAGCACAGAGCATACAGAGAGGGCATTGACAACTTGTTGGTGCTTCTCATTGGAGGCATTCCCATTGCAATGCCAACAGTTCTTTCAGTAACCATGGCCATCGGATCGCATCGCCTTTCGCAGCAAGGTGCCATCACCAAGAGGATGACAGCCATTGAAGAGATGGCTGGAATGGATGTCCTGTGCAGTGACAAGACAGGAACTCTCACCCTCAACAAGCTCACAGTAGACAAGTCCCTGATTGAGGTGTTTGTACCAAACATGGACAAGGACGCTGTCATGCTGTTTGCTGCAAGAGCGTCGAGAGTCGAAAATCAAGACGCCATCGATGCCTGCATTGTTGGAATGTTGGATGACCCCAAAGAGGCAAGAGCAGGAATAACTGAGGTGCATTTCTTGCCGTTTAACCCGGTCGATAAACGTACTGCCATTACCTACATCGACACAGATGGTAACTGGCACAGAAGCAGCAAGGGCGCTCCTGAACAGATCATTGACCTTTGTGACCTTAAAGGTGAAGCAAGGCAGAAAGCTCATACCATTATCGATAACTACGCTAATCGCGGTCTTCGTTCATTGGCCGTTGGTCGGCAGACTGTTAAAGACAAGGACAAGGAAAGTGCTGGAGAACCATGGGAATTTGTTGGTCTCTTGCCTCTATTTGATCCTCCAAGGCATGACAGTGCAGAAACCATTCGCCGAGCTCTAGAACTTGGTGTTAATGTTAAGATGATCACTGGTGACCAACTTGCAATAGGGAAAGAAACCGGTCGGAGGCTCGGCATGGGCACGAACATGTATCCGTCGTCGTCTTTGCTCGGGCAAAGCATGGATGAGACAATTGCTTCTATTCCTGTTGATGAACTCATTGAGAAGGCTGATGGGTTTGCAGGAGTCTTCCCGGAACACAAGTATGAGATTGTTAAGAGACTTCAGGAGAGGAAACATATTTGTGGCATGACAGGAGATGGTGTCAATGATGCTCCTGCTCTCAAGAGGGCCGACATCGGTATCGCTGTGGCTGATGCAACCGACGCAGCACGAAGCGCATCAGACATTGTCTTGACCGAGCCAGGACTAAGTGTGATTGTGAGTGCTGTGTTAACCAGTAGAGCCATCTTTCAAAGAATGAAAAACTACACTATCTATGCAGTATCCATTACTATACGTATTGTGTTGGGATTCATGCTTGTTGCTCTCATCTGGAAGTTTGATTTCTCGCCTTTTATGGTCCTTATCATTGCCATCCTAAACGATGGAACCATCATGACCATTTCAAAGGATAGGGTGAAGCCGTCACCTGTGCCTGACTCATGGAGACTCAAAGAGATTTTTGCTACTGGTGTTGTCCTTGGAACATACATGGCCTTCACTACCGTGTTTTTCTTCTGGCTCGCCAACGAAACCGTCTTCTTCCCGAAAACATTTGGTGTAAAGCCACTCAAAGATCTTGCTGAGATGAACTCTGCTCTCTATCTTCAAGTGAGCATTATCAGTCAAGCTCTCATCTTTGTCACCAGGTCAAGAAGTTGGTCCTTTGTTGAATGCCCTGGTTTCTTGCTAGTTATTGCCTTCCTTGCTGCACAGTTGGTTGCCACTCTAATTGCTGTATACTCCAAATGGGACTTTGCAAGGATCAAAGGCATTGGGTGGGGATGGGCAGGAGCCATCTGGTTATTCAGTATTGTCACTTACTTCCCACTTGATGTCCTCAAATTTGCAATCCGTTATGGCCTCAGCGGCAAGGCCTGGGACAACATGCTCGAGAATAAGACTGCGTTTACGACGAAGAAGGATTACGGAAAAGGCGAAAGAGAGGCACAATGGGCTATAGCACAACGTACAAGGCATGGCCTGCAGCCACCAGAAACCATATTTCATGAAAAGAGCAGCTACGAGGAACTTTCAGCGATTGCAGAGCAAGCCAAGAAAAGAGCTGAAATTGCCAGGCTGAGGGAACTCCACACTTTGAAGGGCCATGTAGAGTCGGTGGTGAAGTTGAAGGGGTTGGACATTGACACTATCCAACAGCACTATACTCTTTGA 3192 47.4 MASQALTEYERKRLENIRRNDEMMAALKLQSKASELSAASKRQRTMNKMLHSHCHIRQPVTGTARRVWEATEGINQLCSALVVTTPALQVYSFSNPQPIMGFLESTPSPSPFPITMGDISLEDVKNENVDLERIPVEEVFEKLKCTKEGLSTAEGEKRLQIFGPNKLEEKKESKVLKFLGFMWNPLSWVMESAAIMAIALANGGGKPPDWQDFVGIIVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWKEEEAAILVPGDVISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPGDGVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMVIEILVMFAIQHRAYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFVPNMDKDAVMLFAARASRVENQDAIDACIVGMLDDPKEARAGITEVHFLPFNPVDKRTAITYIDTDGNWHRSSKGAPEQIIDLCDLKGEARQKAHTIIDNYANRGLRSLAVGRQTVKDKDKESAGEPWEFVGLLPLFDPPRHDSAETIRRALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSMDETIASIPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWRLKEIFATGVVLGTYMAFTTVFFFWLANETVFFPKTFGVKPLKDLAEMNSALYLQVSIISQALIFVTRSRSWSFVECPGFLLVIAFLAAQLVATLIAVYSKWDFARIKGIGWGWAGAIWLFSIVTYFPLDVLKFAIRYGLSGKAWDNMLENKTAFTTKKDYGKGEREAQWAIAQRTRHGLQPPETIFHEKSSYEELSAIAEQAKKRAEIARLRELHTLKGHVESVVKLKGLDIDTIQQHYTL 1063
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2351720 2358360 + CmoCh10G005190.1 Cmo10g00519 389865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00519 1063 Coils Coil 1014 1034 - -
Cmo10g00519 1063 SFLD p-type atpase 426 755 IPR044492 -
Cmo10g00519 1063 CDD P-type_ATPase_H 149 955 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cmo10g00519 1063 Gene3D - 1012 1063 - -
Cmo10g00519 1063 Gene3D - 441 740 IPR023214 -
Cmo10g00519 1063 SUPERFAMILY Calcium ATPase, transmembrane domain M 129 959 IPR023298 -
Cmo10g00519 1063 Gene3D - 247 331 - -
Cmo10g00519 1063 Gene3D - 456 603 IPR023299 GO:0000166
Cmo10g00519 1063 PANTHER CALCIUM-TRANSPORTING ATPASE 116 1043 - -
Cmo10g00519 1063 SUPERFAMILY HAD-like 440 750 IPR036412 -
Cmo10g00519 1063 Pfam E1-E2 ATPase 246 423 - -
Cmo10g00519 1063 SUPERFAMILY Calcium ATPase, transduction domain A 247 344 IPR008250 -
Cmo10g00519 1063 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 678 790 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo10g00519 1063 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 216 485 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo10g00519 1063 PRINTS P-type cation-transporting ATPase superfamily signature 703 722 - -
Cmo10g00519 1063 PRINTS P-type cation-transporting ATPase superfamily signature 294 308 - -
Cmo10g00519 1063 PRINTS P-type cation-transporting ATPase superfamily signature 620 630 - -
Cmo10g00519 1063 PRINTS P-type cation-transporting ATPase superfamily signature 726 738 - -
Cmo10g00519 1063 PRINTS P-type cation-transporting ATPase superfamily signature 598 609 - -
Cmo10g00519 1063 PRINTS P-type cation-transporting ATPase superfamily signature 444 458 - -
Cmo10g00519 1063 Pfam Cation transporter/ATPase, N-terminus 134 196 IPR004014 -
Cmo10g00519 1063 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 149 920 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cmo10g00519 1063 SFLD C1.7: P-type atpase like 426 755 - -
Cmo10g00519 1063 Pfam haloacid dehalogenase-like hydrolase 440 717 - -
Cmo10g00519 1063 PRINTS H+-transporting ATPase (proton pump) signature 734 759 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo10g00519 1063 PRINTS H+-transporting ATPase (proton pump) signature 703 719 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo10g00519 1063 PRINTS H+-transporting ATPase (proton pump) signature 560 578 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo10g00519 1063 PRINTS H+-transporting ATPase (proton pump) signature 874 895 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo10g00519 1063 PRINTS H+-transporting ATPase (proton pump) signature 675 691 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo10g00519 1063 ProSitePatterns E1-E2 ATPases phosphorylation site. 446 452 IPR018303 -
Cmo10g00519 1063 SMART Cation_ATPase_N_a_2 130 202 IPR004014 -
Cmo10g00519 1063 Gene3D - 209 929 - -
Cmo10g00519 1063 PANTHER PLASMA MEMBRANE ATPASE 116 1043 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00519 Cmo-Chr10:2351720 Cmo14g01395 Cmo-Chr14:11475025 0 dispersed
Cmo11g00483 Cmo-Chr11:2349074 Cmo10g00519 Cmo-Chr10:2351720 0 dispersed
Cmo11g00484 Cmo-Chr11:2352375 Cmo10g00519 Cmo-Chr10:2351720 3.01E-48 dispersed
Cmo10g00518 Cmo-Chr10:2345080 Cmo10g00519 Cmo-Chr10:2351720 0 tandem
Cmo10g00519 Cmo-Chr10:2351720 Cmo10g00520 Cmo-Chr10:2359035 2.73E-18 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00519 K01535 - csv:101214655 1744.55