Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00578 ATGGCCAGCTGCCTCGATATTGCACCTGAACAGCTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTGAATATGGCTGCTGCATTTCAGGCTCTTTCCTGGCAAGATGTTCAGGTACCAAATTACAACTTATACAGTTGTAACGGACCTGATTTTCAAGGTGATTTTGGATCGTCGTCGTCGTCTTCGTCATCATCGAAATGTGAAAACAACAAGATGGAAATTCGAGCAAACACAACAATGGGAACAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAAGCAGAGAGTACCATCTGCATATAATCAGTTCATAAAAGAGGAAATTCAAAGGATTAAGGCTAATAATCCTGAGATTAGCCATAGAGAAGCTTTCAGTACTGCAGCCAAGAACTGGGCTCATTATCCTCGTATACCCTTTTGGTCGGATGTTGGAAACCAGCAATCAAATGAAGCTAGATGA 546 43.59 MASCLDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALSWQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSSSKCENNKMEIRANTTMGTEERVVNRPPEKKQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHYPRIPFWSDVGNQQSNEAR 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2633020 2635308 + CmoCh10G005780.1 Cmo10g00578 389924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00578 181 PANTHER AXIAL REGULATOR YABBY 5 1 174 - -
Cmo10g00578 181 Pfam YABBY protein 9 168 IPR006780 GO:0007275
Cmo10g00578 181 Gene3D High mobility group box domain 109 165 IPR036910 -
Cmo10g00578 181 SUPERFAMILY HMG-box 108 163 IPR036910 -
Cmo10g00578 181 PANTHER PROTEIN YABBY 6-RELATED 1 174 IPR006780 GO:0007275
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00578 Cmo-Chr10:2633020 Cmo15g01209 Cmo-Chr15:8382484 2.64E-49 dispersed
Cmo10g00578 Cmo-Chr10:2633020 Cmo11g00535 Cmo-Chr11:2613770 1.18E-107 wgd
Cmo10g00578 Cmo-Chr10:2633020 Cmo12g01231 Cmo-Chr12:10977446 4.92E-80 wgd
Cmo10g00578 Cmo-Chr10:2633020 Cmo05g01308 Cmo-Chr5:10151693 1.41E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10464 PF04690 YABBY 3.30E-68 CL0114 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00578 K25796 - cmos:111461521 372.089