Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00578 ATGGCCAGCTGCCTCGATATTGCACCTGAACAGCTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTGAATATGGCTGCTGCATTTCAGGCTCTTTCCTGGCAAGATGTTCAGGTACCAAATTACAACTTATACAGTTGTAACGGACCTGATTTTCAAGGTGATTTTGGATCGTCGTCGTCGTCTTCGTCATCATCGAAATGTGAAAACAACAAGATGGAAATTCGAGCAAACACAACAATGGGAACAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAAGCAGAGAGTACCATCTGCATATAATCAGTTCATAAAAGAGGAAATTCAAAGGATTAAGGCTAATAATCCTGAGATTAGCCATAGAGAAGCTTTCAGTACTGCAGCCAAGAACTGGGCTCATTATCCTCGTATACCCTTTTGGTCGGATGTTGGAAACCAGCAATCAAATGAAGCTAGATGA 546 43.59 MASCLDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALSWQDVQVPNYNLYSCNGPDFQGDFGSSSSSSSSSKCENNKMEIRANTTMGTEERVVNRPPEKKQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHYPRIPFWSDVGNQQSNEAR 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2633020 2635308 + CmoCh10G005780.1 Cmo10g00578 389924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00578 181 PANTHER AXIAL REGULATOR YABBY 5 1 174 - -
Cmo10g00578 181 Pfam YABBY protein 9 168 IPR006780 GO:0007275
Cmo10g00578 181 Gene3D High mobility group box domain 109 165 IPR036910 -
Cmo10g00578 181 SUPERFAMILY HMG-box 108 163 IPR036910 -
Cmo10g00578 181 PANTHER PROTEIN YABBY 6-RELATED 1 174 IPR006780 GO:0007275
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00578 K25796 YAB; plant-specific transcription factor YABBY family protein - cmos:111461521 372.089
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00578 Cmo-Chr10:2633020 Cmo15g01209 Cmo-Chr15:8382484 2.64E-49 dispersed
Cmo10g00578 Cmo-Chr10:2633020 Cmo11g00535 Cmo-Chr11:2613770 1.18E-107 wgd
Cmo10g00578 Cmo-Chr10:2633020 Cmo12g01231 Cmo-Chr12:10977446 4.92E-80 wgd
Cmo10g00578 Cmo-Chr10:2633020 Cmo05g01308 Cmo-Chr5:10151693 1.41E-80 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo04g01795 CST 17 175 C2C2-YABBY Transcription Factor Family AT1G69180 58.5 2.3e-42 169.5
Cmo18g01120 CST 85 233 C2C2-YABBY Transcription Factor Family AT1G69180 57.7 1.5e-38 156.8
Cmo02g01597 . 75 237 C2C2-YABBY Transcription Factor Family AT2G45190 60.0 7.2e-43 171.0
Cmo15g01209 CCT 81 236 C2C2-YABBY Transcription Factor Family AT2G45190 56.2 1.8e-41 166.4
Cmo02g01337 . 1 166 C2C2-YABBY Transcription Factor Family AT1G08465 66.5 1.3e-53 206.8
Cmo15g01209 CCT 37 224 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 8.0e-43 171.0
Cmo02g01597 . 31 223 C2C2-YABBY Transcription Factor Family AT1G08465 52.6 1.4e-42 170.2
Cmo11g00535 . 5 178 C2C2-YABBY Transcription Factor Family AT1G08465 54.5 5.2e-42 168.3
Cmo05g01308 . 5 170 C2C2-YABBY Transcription Factor Family AT1G08465 50.9 5.4e-39 158.3
Cmo02g01597 . 42 236 C2C2-YABBY Transcription Factor Family AT4G00180 56.9 3.1e-51 199.1
Cmo15g01209 CCT 48 235 C2C2-YABBY Transcription Factor Family AT4G00180 55.1 1.7e-49 193.4
Cmo11g00535 . 7 174 C2C2-YABBY Transcription Factor Family AT2G26580 70.8 1.2e-61 233.4
Cmo05g01308 . 8 175 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 2.0e-61 232.6
Cmo12g01231 . 8 168 C2C2-YABBY Transcription Factor Family AT2G26580 69.1 1.5e-56 216.5
Cmo10g00578 . 7 168 C2C2-YABBY Transcription Factor Family AT2G26580 67.9 2.8e-55 212.2
Cmo02g01337 . 1 166 C2C2-YABBY Transcription Factor Family AT2G26580 59.0 1.7e-47 186.4
Cmo15g01209 CCT 37 196 C2C2-YABBY Transcription Factor Family AT2G26580 56.4 3.8e-44 175.3
Cmo02g01597 . 33 195 C2C2-YABBY Transcription Factor Family AT2G26580 54.2 5.5e-43 171.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10464 PF04690 YABBY 3.30E-68 CL0114 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00578 Cmo_Chr10 FPKM 67.340477 73.723083 20.522572 20.223431 8.763266 9.949701 9.801202 10.036276 8.673384 10.125989