Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00582 ATGAAGCGGGTATCTCGAAAAATTGGGAAGTATGAGATGGGGCGGACTGTCGGCGAAGGAACGTTTGCCAAGGTTAAGTTTGCATGTAACACGGAGACGAAGGAGGGCGTGGCCATGAAAGTTATGGCCAAAAGTAGCATTCTCAAACACAAAATGGTAGAACAGATTAAGAGGGAGATATCGATAATGAAAATTGTCAGGCATCCACATATTGTCAGACTGCATGAGGTATTGGCTAGCCAGACAAAGATATATATAATTCTTGAGTTTGTCTCTGGAGGTGAACTATATGATAAAATAGTTCTTCATAAGAAGATTCCAGAATTTGAGTCTAGACGATACTTTCAACAACTGATAGATGCAGTTGCTCATTGTCACAGCAAGGGTGTATACCACAGGGACCTTAAGCCTGAAAACCTTCTTCTTGATGCTGATGGAAATCTGAAGGTTTCTGACTTTGGACTGAGTGCGCTGTCTCAACAAGGTGTTGAGTTGCTTCACACCACATGTGGAACTCCTAATTATGTTGCGCCTGAGGTGCTTCGTGGTCAGGGTTATGATGGTGCAGCTGCAGATATATGGTCATGTGGAGTCATCCTCTATGTACTAATGGCCGGATATCTTCCTTTTTCAGAGTCAGGCCTCCCCACCCTAAATATGAAGATAAATGCAGCGGAGTATTCCTGCCCCTATTGGTTTTCACCTGGTGCGAAGTCCTTGATACAGAAGATCCTTGATCCGAATCCTAAAACTCGGATTCGAATTGAAGAAATCAGAAAAGACCCATGGTTCAGAAGAAACTACATGCCTGCTAAACTAGGAGAAGTTGAGGAAGTAAACTTAGATGATGTACGGGCTGTTTTTTATGGCATTGAGAATGAATATGTAGTTGATCAGTCAGAAAAAAGTGACGATGGTCCGTTGATGATGAATGCATTTGAGATGATAACATTATCTCAAGGGTTAAATCTGTCACCATTATTTGACCGGCGACAGGACTATATAAAGCGGCAAACACGTTTTGTTTCTCGTAAACCTGCTAACTTTATAATATCTACCATTGAAGTAGTGGCAGAAGCAATGGGTTTAAATGTCCACACACGTAATTTCAAGACAAGGTTGGAAAGAAGGACTGGACACAGGGCTTCACAGTTTGCAGCTGTGCTGGAGATTTATGAAGTGGCCCCGTCACTTTTTATGGTGGACGTTCGCAAGGCTGCAGGAGACACTCTAGAATATCACAAGTTCTACAAGAATTTCTGTGCTAAGCTAGAAAATATAATCTGGAAACCATCAGAGAGTGTAGGGAACTGA 1314 42.24 MKRVSRKIGKYEMGRTVGEGTFAKVKFACNTETKEGVAMKVMAKSSILKHKMVEQIKREISIMKIVRHPHIVRLHEVLASQTKIYIILEFVSGGELYDKIVLHKKIPEFESRRYFQQLIDAVAHCHSKGVYHRDLKPENLLLDADGNLKVSDFGLSALSQQGVELLHTTCGTPNYVAPEVLRGQGYDGAAADIWSCGVILYVLMAGYLPFSESGLPTLNMKINAAEYSCPYWFSPGAKSLIQKILDPNPKTRIRIEEIRKDPWFRRNYMPAKLGEVEEVNLDDVRAVFYGIENEYVVDQSEKSDDGPLMMNAFEMITLSQGLNLSPLFDRRQDYIKRQTRFVSRKPANFIISTIEVVAEAMGLNVHTRNFKTRLERRTGHRASQFAAVLEIYEVAPSLFMVDVRKAAGDTLEYHKFYKNFCAKLENIIWKPSESVGN 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2651442 2656116 + CmoCh10G005820.1 Cmo10g00582 389928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00582 437 Pfam Protein kinase domain 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00582 437 Gene3D Transferase(Phosphotransferase) domain 1 2 308 - -
Cmo10g00582 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cmo10g00582 437 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Cmo10g00582 437 PANTHER - 4 433 - -
Cmo10g00582 437 Gene3D Kinase associated domain 1, KA1 309 430 - -
Cmo10g00582 437 Pfam NAF domain 307 366 IPR004041 GO:0007165
Cmo10g00582 437 ProSitePatterns Protein kinases ATP-binding region signature. 17 49 IPR017441 GO:0005524
Cmo10g00582 437 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 4 433 - -
Cmo10g00582 437 SMART serkin_6 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00582 437 ProSiteProfiles Protein kinase domain profile. 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00582 437 CDD CIPK_C 311 426 - -
Cmo10g00582 437 SUPERFAMILY Protein kinase-like (PK-like) 8 321 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00587 Cmo-Chr5:2901096 Cmo10g00582 Cmo-Chr10:2651442 4.27E-09 dispersed
Cmo10g00582 Cmo-Chr10:2651442 Cmo13g00546 Cmo-Chr13:6316667 0 dispersed
Cmo10g00582 Cmo-Chr10:2651442 Cmo12g00137 Cmo-Chr12:856866 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74616 PF00069 Pkinase 2.90E-72 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00582 - - csv:101203676 811.601