Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00620 ATGGATGCCGTCAGAAACAGAGGGCCTTTCAGGGTTTCTGTTTGTGGTCAAGAAGAGCTTGAGCAACTCTCCAGAGATGGCAGTCAGTTTAGCCTCAGCACTGGGATATTGCCCTCTCTTGGTGCTAGAAGCAATCGCAGAGTCAAACTCCGGCGTTTTGTCATTTCGCCTTATGATCATCGATACAGGATTTGGGAGACTTTTCTCGTTGTTTTGGTGGTATATACAGCTTGGGTCTCGCCATTCGAGTTTGGATTCCTCAAGAAACCCCAATCTCCACTTTCCATTACAGATAATGTGGTTAATGGATTTTTTGCTGTGGATATTGTTCTCACATTCTTTGTGGCTTACCTCGATAAATCCACTTATTTACTTGTCGACGAACCGAAGAAGATTGCTCTGAAGTATGCAAGTTCATGGCTAGTCTTTGATGTCATATCCACAATTCCTTCTGAACTTGCACATAAGATCTCCCCTTCACCTCTCCGTTCTTATGGATTATTCAACATGCTTCGTCTATGGCGTCTTCGAAGAGTCAGTGCTCTTTTTTCCAGACTGGAAAAAGATAGGAACTATAATTACTTTTGGGTTCGATGTGCAAAACTCGTTTGTGTTACTCTGTTTGCGGTTCACTGTGCTGCATGCTTCTATTATCTCCTTGCTGCTCGTTATCATGACCCAAAAAGGACATGGATTGGAGCATCTATGGAGGACTTTCTTGAGCAAAGTTTGTGGATTAGATATGTCACTTCGATTTACTGGTCTATCACTACCCTAACCACTGTCGGCTATGGTGACTTGCATCCTGTGAATACAAGGGAAATGAGGGATACCATACAAGCTGCATCTAGTTTTGCCCACAGGAATCAACTTCCTGTTCGTTTGCAAGACCAAATGCTTGCACATTTGTGTCTAAAGTTCAGAACTGACTCTGAGGGATTGCAGCAGCAAGAAACACTCGATTCCTTGCCGAAAGCCATCCGATCAAGCATTTCACATTATCTTTTCTATTCTCTAGTGGACAAGGTCTACTTGTTTCGTGGTGTTTCAAATGACCTAATTTTTCAACTGGTTTCGGAAATGAAGGCAGAGTATTTTCCTCCAAAAGAAGATGTGATTTTACAAAATGAAGCCCCAACAGACTTCTATATTCTTGTCACGGGTGCTGTGGATTTGCTTGTTCTTAAGAATGGAGTTGAACAGGCAAGTCTGTTCATTGAAGCTCTTGGATTTTCTGAATGTTGGGTTGTTGGAGAGGCTAAAACTGGTGAACTTTGCGGAGAGATTGGGGTGTTATGTTACAGGCCACAACTGTTTACTGTGCGTACAAAACGATTGAGTCAGTTGCTGCGTCTGAATCGAACGGCTTTCCTGAATATTGTTCAATCTAATGTTGGTGATGGGACTATAATCATGAACAATCTTCTTCAGCACTTGAAAGACGTCAAAGACAAGGACCCCATCATGGAAGGAGTTTTGTTGGAGACAGAGAACATGCTAGCTAGAGGCAGATTGGACCTACCACTTAGTCTTTGCTTTGCAACACTTAGAGGTGACGACTTGCTTTTACACCAACTTTTGAAAAGAGGTCTCGATCCAAATGAATCAGATAACAATGGGAGGACTTCACTTCATATAGCAGCATCAAAAGGAAACGAGAACTGTGTGCTTCTATTACTGGACTTTGGAGCGGATCCCAACAGTAGAGATTCAGACGGGATTGTGCCACTATGGGAGGCGATACTGGGTGGCCATGAGGCAGTAGTGCAGCTACTTATAGACAATGGTGCTAATCTCCGATCAGGAGATGTGGGTCACTTCGCGTGTACTGCCGCAGAGCAAAACAACCTCCAGTTGCTCAAAGAGATTCTCCGATATGGCGGAGACGTTTTGAGTTCCAGGAACAATGGAACGACTGCTTTACATGTTGCTGTTTGTGAAGACAACATTGAGATCGTCAAGTTCCTTCTTAAACAAGGAGCTGATATTGACAAACCAGATGTCCATGGATGGACTCCAAGAGATCTAGCAGACCAACAGGGACATGAAGAAATTAAAAACCTCTTCCAGACAATAAAAGAATCGAAAACTCAATCTGTCGTTGCCATTCCTGAGAAGCAGAAAGCGATTCGCTTCCTTGGAAGATTTACAAGCGAGCCTATGATTCCTCCTTCATCTCAGGAAGGGAATGATGGTTCATGGGCGGGTCAATCTCGTCCACGACGTAGGACTAACAACTTCCATAACTCATTGTTTGGAATCATGTCAGCAGCACATACAGGCGAGAAAGACATGAGTTTTGCTGATCACCAAACCAGAGGAGAGAAATCTGGAACCAACCCGGCAAGGGTGATAATCAGCTGTCCAGAGATTGGCGAAGTAGCTGGGAAGGTAGTGCTGCTTCCAGAAAGCTTCAACGAGCTTCTTGAGATTGGTTCCATGAAATATGGGATTATGGCTTCAAAGGTATTGAACAAAGATGGGGCTGCCATTGAAGATATAGAGGTCATTAGGGACGGCGATCAGCTTATTTTTGTCAGCAATGGAGGAACCATATAA 2559 43.65 MDAVRNRGPFRVSVCGQEELEQLSRDGSQFSLSTGILPSLGARSNRRVKLRRFVISPYDHRYRIWETFLVVLVVYTAWVSPFEFGFLKKPQSPLSITDNVVNGFFAVDIVLTFFVAYLDKSTYLLVDEPKKIALKYASSWLVFDVISTIPSELAHKISPSPLRSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLVCVTLFAVHCAACFYYLLAARYHDPKRTWIGASMEDFLEQSLWIRYVTSIYWSITTLTTVGYGDLHPVNTREMRDTIQAASSFAHRNQLPVRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLIFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQASLFIEALGFSECWVVGEAKTGELCGEIGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNIVQSNVGDGTIIMNNLLQHLKDVKDKDPIMEGVLLETENMLARGRLDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDNNGRTSLHIAASKGNENCVLLLLDFGADPNSRDSDGIVPLWEAILGGHEAVVQLLIDNGANLRSGDVGHFACTAAEQNNLQLLKEILRYGGDVLSSRNNGTTALHVAVCEDNIEIVKFLLKQGADIDKPDVHGWTPRDLADQQGHEEIKNLFQTIKESKTQSVVAIPEKQKAIRFLGRFTSEPMIPPSSQEGNDGSWAGQSRPRRRTNNFHNSLFGIMSAAHTGEKDMSFADHQTRGEKSGTNPARVIISCPEIGEVAGKVVLLPESFNELLEIGSMKYGIMASKVLNKDGAAIEDIEVIRDGDQLIFVSNGGTI 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2810905 2816556 + CmoCh10G006200.1 Cmo10g00620 389966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00620 852 ProSiteProfiles cAMP/cGMP binding motif profile. 345 461 IPR000595 -
Cmo10g00620 852 ProSiteProfiles Ankyrin repeat region circular profile. 539 570 - -
Cmo10g00620 852 ProSiteProfiles Ankyrin repeat region circular profile. 572 603 - -
Cmo10g00620 852 ProSiteProfiles Ankyrin repeat profile. 539 571 IPR002110 GO:0005515
Cmo10g00620 852 PRINTS Ankyrin repeat signature 540 555 IPR002110 GO:0005515
Cmo10g00620 852 PRINTS Ankyrin repeat signature 652 666 IPR002110 GO:0005515
Cmo10g00620 852 Pfam Ion transport protein 63 275 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo10g00620 852 MobiDBLite consensus disorder prediction 719 742 - -
Cmo10g00620 852 SMART cnmp_10 345 476 IPR000595 -
Cmo10g00620 852 ProSiteProfiles KHA domain profile. 783 852 IPR021789 -
Cmo10g00620 852 ProSiteProfiles Ankyrin repeat region circular profile. 636 667 - -
Cmo10g00620 852 SUPERFAMILY cAMP-binding domain-like 271 479 IPR018490 -
Cmo10g00620 852 ProSiteProfiles Ankyrin repeat profile. 636 668 IPR002110 GO:0005515
Cmo10g00620 852 SMART ANK_2a 539 568 IPR002110 GO:0005515
Cmo10g00620 852 SMART ANK_2a 636 665 IPR002110 GO:0005515
Cmo10g00620 852 SMART ANK_2a 572 601 IPR002110 GO:0005515
Cmo10g00620 852 SMART ANK_2a 506 535 IPR002110 GO:0005515
Cmo10g00620 852 SMART ANK_2a 603 632 IPR002110 GO:0005515
Cmo10g00620 852 Gene3D - 507 691 IPR036770 -
Cmo10g00620 852 PANTHER POTASSIUM CHANNEL AKT1 271 848 IPR045319 GO:0005249|GO:0006813
Cmo10g00620 852 Pfam KHA, dimerisation domain of potassium ion channel 783 845 IPR021789 -
Cmo10g00620 852 PRINTS EAG/ELK/ERG potassium channel family signature 75 82 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo10g00620 852 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo10g00620 852 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo10g00620 852 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo10g00620 852 PANTHER POTASSIUM CHANNEL AKT1 7 275 IPR045319 GO:0005249|GO:0006813
Cmo10g00620 852 PANTHER K+ TRANSPORTER 1-RELATED 271 848 - -
Cmo10g00620 852 SUPERFAMILY Voltage-gated potassium channels 57 275 - -
Cmo10g00620 852 ProSiteProfiles Ankyrin repeat profile. 572 604 IPR002110 GO:0005515
Cmo10g00620 852 CDD CAP_ED 345 464 IPR000595 -
Cmo10g00620 852 Gene3D Jelly Rolls 309 485 IPR014710 -
Cmo10g00620 852 Gene3D - 63 279 - -
Cmo10g00620 852 SUPERFAMILY Ankyrin repeat 510 689 IPR036770 -
Cmo10g00620 852 Pfam Cyclic nucleotide-binding domain 365 464 IPR000595 -
Cmo10g00620 852 MobiDBLite consensus disorder prediction 720 742 - -
Cmo10g00620 852 PANTHER K+ TRANSPORTER 1-RELATED 7 275 - -
Cmo10g00620 852 Pfam Ankyrin repeats (3 copies) 610 666 IPR002110 GO:0005515
Cmo10g00620 852 Pfam Ankyrin repeats (3 copies) 511 600 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00479 Cmo-Chr9:2166992 Cmo10g00620 Cmo-Chr10:2810905 0 dispersed
Cmo10g00620 Cmo-Chr10:2810905 Cmo13g00587 Cmo-Chr13:6533380 1.45E-07 dispersed
Cmo10g00620 Cmo-Chr10:2810905 Cmo11g00553 Cmo-Chr11:2690138 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00620 K21867 - csv:101220784 1526.15