Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00622 ATGAAAGGGGAAGTACAATTGGAGTCATCAATTGGCCAAACCCCTAGTGACTCTGATCCTCTGCTTGAGAATCAGCCCGATTCATCCCATGAAACCTCTGATGAAATTAAGAACGAGGATACTGAAGCTGGTTCCATTCCTTGTTGTCGTATTTGCCTAGAGAGCGATGCCGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCGTTAAGGAAGGGTTTGCTTTCTCGCATTGCACAACATGCAAAGCCCAATTTCACCTGCAAGTTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGAGATGTCCTCCTTGTATTTCTAGCTGTACAAACTTTAATAGCGGCAATGGGTGGTTATGCATATATTATGGACAAAGACGGGGCATTCAGGAATTCTTTCAATGATGGATGGGACCGTATTCTGTCCAAACATCCTATTCCGTTTTATTATTGTGTCGGGGTCCTGGCCTTCTTTGTTCTGCTCGGATTCTTCGGCCTCATACTACATTGTTCCTCCCTGAATAGTAATGATCCACGAGTTGCTGGATGTCACAACTGTTGCTATGGATGGGGCATCTTGGATTGTTTCCCTGCGTCTATGGAGGCCTGCTTTGCACTTGTTATTGTCTTCGTTGTTATCTTTGTAATCCTTGGCATAGCTTATGGTTTCCTTGCTGCCACTATGGGTATTCAAAGAATCTGGCAAAGGCATTACCACATTCTCACCAAAAGGGAGCTGACTAAAGAATACGTGGTGGAGGATCTTCATGGTTGTTATACTCCTCCAAAATTGGAACCCGAACACGAACAGCACTTGAAAATGCTACAGCTTCTGTAA 915 44.04 MKGEVQLESSIGQTPSDSDPLLENQPDSSHETSDEIKNEDTEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLQVSLFEDNSWRKVKFRLFVARDVLLVFLAVQTLIAAMGGYAYIMDKDGAFRNSFNDGWDRILSKHPIPFYYCVGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMGIQRIWQRHYHILTKRELTKEYVVEDLHGCYTPPKLEPEHEQHLKMLQLL 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2817436 2820214 - CmoCh10G006220.1 Cmo10g00622 389968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00622 304 SMART ringv_2 48 100 IPR011016 GO:0008270
Cmo10g00622 304 MobiDBLite consensus disorder prediction 1 41 - -
Cmo10g00622 304 Pfam RING-variant domain 49 99 IPR011016 GO:0008270
Cmo10g00622 304 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 304 - -
Cmo10g00622 304 MobiDBLite consensus disorder prediction 7 27 - -
Cmo10g00622 304 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 304 - -
Cmo10g00622 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 113 IPR013083 -
Cmo10g00622 304 SUPERFAMILY RING/U-box 47 104 - -
Cmo10g00622 304 CDD RING_CH-C4HC3_MARCH 49 100 - -
Cmo10g00622 304 ProSiteProfiles Zinc finger RING-CH-type profile. 41 106 IPR011016 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00622 Cmo-Chr10:2817436 Cmo14g01212 Cmo-Chr14:10324732 1.01E-40 dispersed
Cmo03g00823 Cmo-Chr3:6598502 Cmo10g00622 Cmo-Chr10:2817436 6.37E-70 transposed
Cmo10g00622 Cmo-Chr10:2817436 Cmo11g00552 Cmo-Chr11:2687384 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00622 - - csv:101220313 604.364