Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo10g00622 | ATGAAAGGGGAAGTACAATTGGAGTCATCAATTGGCCAAACCCCTAGTGACTCTGATCCTCTGCTTGAGAATCAGCCCGATTCATCCCATGAAACCTCTGATGAAATTAAGAACGAGGATACTGAAGCTGGTTCCATTCCTTGTTGTCGTATTTGCCTAGAGAGCGATGCCGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCGTTAAGGAAGGGTTTGCTTTCTCGCATTGCACAACATGCAAAGCCCAATTTCACCTGCAAGTTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGAGATGTCCTCCTTGTATTTCTAGCTGTACAAACTTTAATAGCGGCAATGGGTGGTTATGCATATATTATGGACAAAGACGGGGCATTCAGGAATTCTTTCAATGATGGATGGGACCGTATTCTGTCCAAACATCCTATTCCGTTTTATTATTGTGTCGGGGTCCTGGCCTTCTTTGTTCTGCTCGGATTCTTCGGCCTCATACTACATTGTTCCTCCCTGAATAGTAATGATCCACGAGTTGCTGGATGTCACAACTGTTGCTATGGATGGGGCATCTTGGATTGTTTCCCTGCGTCTATGGAGGCCTGCTTTGCACTTGTTATTGTCTTCGTTGTTATCTTTGTAATCCTTGGCATAGCTTATGGTTTCCTTGCTGCCACTATGGGTATTCAAAGAATCTGGCAAAGGCATTACCACATTCTCACCAAAAGGGAGCTGACTAAAGAATACGTGGTGGAGGATCTTCATGGTTGTTATACTCCTCCAAAATTGGAACCCGAACACGAACAGCACTTGAAAATGCTACAGCTTCTGTAA | 915 | 44.04 | MKGEVQLESSIGQTPSDSDPLLENQPDSSHETSDEIKNEDTEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLQVSLFEDNSWRKVKFRLFVARDVLLVFLAVQTLIAAMGGYAYIMDKDGAFRNSFNDGWDRILSKHPIPFYYCVGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMGIQRIWQRHYHILTKRELTKEYVVEDLHGCYTPPKLEPEHEQHLKMLQLL | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2817436 | 2820214 | - | CmoCh10G006220.1 | Cmo10g00622 | 389968 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo10g00622 | 304 | SMART | ringv_2 | 48 | 100 | IPR011016 | GO:0008270 | |
Cmo10g00622 | 304 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Cmo10g00622 | 304 | Pfam | RING-variant domain | 49 | 99 | IPR011016 | GO:0008270 | |
Cmo10g00622 | 304 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 304 | - | - | |
Cmo10g00622 | 304 | MobiDBLite | consensus disorder prediction | 7 | 27 | - | - | |
Cmo10g00622 | 304 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 304 | - | - | |
Cmo10g00622 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 32 | 113 | IPR013083 | - | |
Cmo10g00622 | 304 | SUPERFAMILY | RING/U-box | 47 | 104 | - | - | |
Cmo10g00622 | 304 | CDD | RING_CH-C4HC3_MARCH | 49 | 100 | - | - | |
Cmo10g00622 | 304 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 41 | 106 | IPR011016 | GO:0008270 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo10g00622 | Cmo-Chr10:2817436 | Cmo14g01212 | Cmo-Chr14:10324732 | 1.01E-40 | dispersed | |
Cmo03g00823 | Cmo-Chr3:6598502 | Cmo10g00622 | Cmo-Chr10:2817436 | 6.37E-70 | transposed | |
Cmo10g00622 | Cmo-Chr10:2817436 | Cmo11g00552 | Cmo-Chr11:2687384 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo10g00622 | - | - | csv:101220313 | 604.364 |