Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00642 ATGAATCCCAACTCCCATTTCAACATCTCACCCCTCCTCCTCCTCCTCTTCCTTCCCGCATTCCTCCGCCTCCCCACCGCCCTCCCCGCCGTCAGCCATGGCAGCCTCTCTGACGCGGAAGCTCTCTACATCCGCCACCGCCAGCTTCTGTACTACAGAGACGAGTTTGGTGACCGTGGCGAAGAAGTCACTGTGGACCCATCTCTGGTTTTCGAAAACGGGAGGATTAGAAATGCTTACATTGCACTTCAGGCTTGGAAACTAGCCATTTTGTCTGACCCTTTCAATCAAACCGCCAATTGGGTCGGATCTGACGTCTGCAGCTACTTCGGCGTTTACTGTGCTCCCGCATTGGACGACCCCAACATCCGTACCGTCGCTGGAATCGATCTCAACCACGGCGACATTGCCGGATACCTCCCTGAAGAGCTCGGTTTGCTTGTGGATCTTGCATTGTTCCATATCAATTCAAACAGATTCTGCGGCACTTTACCCCACAGATTTGATCGTCTCAAGTTGCTACACGAATTGGATCTCAGTAATAACCGGCTCGCTGGGAAGTTCCCCGGCGTGGTTCTCAAGCTTCCGGCGCTCAAGTTTTTGGATCTGAGGTTTAACGAATTCGAAGGAAATGTACCCAGAGAGCTGTTCGATAAGGATTTAGACGCCATTTTTATTAACCACAACAGATTCAGATTCGAACTGCCTGATAATTTTGGAAATTCGCCGGTGTCGGTCATTGTTCTTGGGAACAATAAGTTCCATGGGTGTGTGCCTTCGAGCTTGGGCAACATGACGAGGCTGAATGAGATCATTATGATGAACAATGGGCTTAATTCTTGCTTGCCGCCCGAAATTGGGGCGTTGAAGAACTTGACGGTGTTCGATGTAAGTTCCAATGAGCTGGTGGGTCCGTTGCCGGAGACATTTGGAGGGCTTGCGAGTTTGGAGCAACTCAGTGTGGCGAATAATTTTCTTTCTGGGACGATTCCGGAGAGTATTTGTGATTTGCCTAAGCTTCAGAACTTTACGTTCTCGAATAACTTCTTCTCCGGTGAGCCGCAGACGTGTTTGAGGGTTCCGGATTTCAGTGATCGGAGGAATTGCTTGACTGGGCGGCCAGCGCAGCGGCCGAGTGGTCAATGTAAGGCGTTCTTTTTGCGGCGTGTTGATTGTAATGCGTTTAAATGCCGTGCTTCTTCTGTTTCGCCTTCTACTCCATTTACTCCGCCGGTTGTTTCGCCCTCTTCACCTCCGTCACCGGCAGGGGAGGTGTCTCCTCCATCGCCGCCGCTCTCGCCCCATTTTCCTCCTCTGTCGCCACATTCGCCACCGTCGGCACCGCCATTGGTTTCTTCTCCGCCGTCACCTTCCTCTCCGTCTACACCTACAACCCCTTCAACGCCGCCTCAAGGTCATGCTCCGCCGTCATTACCCTCACCCTTATCGCCCCCTAAAGGTCTTTTTCCGCCGGCATTACCTCCGCCGACTGATCCCTTACCATCCTCACCACCCCACGGCCATACTCCGCCGGGTCCACCTTCGCCTTCCTCTCCATCTACACCTACAACCCCTTCAACGCCGCCTCAAGATCATGCGCCGCCGTCATTACCCTCACCCTTCTCGCCCCCAAAAGGTCATCCACCGCCGGCATTACCTCCGCCGTCTGAACCCTTACCATCTTCACCACCCCACGGCCATACTCCCCCGGGACCACCTTCGCCTTCCTCATCGTCTTCACCGACAACCCCTTCAACGCCGCCTCAAGGTCATGCTCCACCGTCATTACCCTCACCCTTATCTCCCCCAAAAGGTCATCCGCCGCCGGCATTACCTCCGCCGTCTGAGCCCTTACCATCCTCACCACCCCACGGCCATACTCCTCCGGGTCCACCTTCTTCATCCGAACCGCCATCATCGCCGCCACAAGATCACTCTCCGCCAACTCCCTCGCCGTCCGAACCGTCACCTTCAACGCCGCCTACAGGTCACACTCCAGCCATTCCTCCTTCACCATCCGGACCTGCACCTCCATCACCGCCACAAGTCCACAATCCGCCGGTCAAGCTTTCTCCTCCAGTAGCATCATCACCACCAGCACCATCACTCCCAGTTCACGCTCCGCCTCCGCCACATTTCCCTGATTTCCCTTCGCCGCCATCCACACAACCTCCTGTCTACTGTCCCCGCTCCCCATATCCACCATCTCCTCCATCCTACTCCCCAAACCCACCTCTCCAACACCCCACCTCCCCTCCGCCGCCATTACCTGTTCATTCTCCCCCTTCCCCTGTTTATACATCGCCATCGCCGCTTCCTCTTCCTTGCATACAACCTCCTCCACCTCCCCCACCAGATACTCAATACTCAGAACCACCGCCAACACCATCGTCTTCGATTCCCTACAATTCCCCACCACCGCCGTCTCCATCGCCCCCACCGCCTCCAAGCCCTGTATACGGAGGTCCCCTGCCACCAATCTACGGAGTTCCATACGCGTCTCCTCCGCCACCACCCTTATATTAA 2526 55.34 MNPNSHFNISPLLLLLFLPAFLRLPTALPAVSHGSLSDAEALYIRHRQLLYYRDEFGDRGEEVTVDPSLVFENGRIRNAYIALQAWKLAILSDPFNQTANWVGSDVCSYFGVYCAPALDDPNIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTLPHRFDRLKLLHELDLSNNRLAGKFPGVVLKLPALKFLDLRFNEFEGNVPRELFDKDLDAIFINHNRFRFELPDNFGNSPVSVIVLGNNKFHGCVPSSLGNMTRLNEIIMMNNGLNSCLPPEIGALKNLTVFDVSSNELVGPLPETFGGLASLEQLSVANNFLSGTIPESICDLPKLQNFTFSNNFFSGEPQTCLRVPDFSDRRNCLTGRPAQRPSGQCKAFFLRRVDCNAFKCRASSVSPSTPFTPPVVSPSSPPSPAGEVSPPSPPLSPHFPPLSPHSPPSAPPLVSSPPSPSSPSTPTTPSTPPQGHAPPSLPSPLSPPKGLFPPALPPPTDPLPSSPPHGHTPPGPPSPSSPSTPTTPSTPPQDHAPPSLPSPFSPPKGHPPPALPPPSEPLPSSPPHGHTPPGPPSPSSSSSPTTPSTPPQGHAPPSLPSPLSPPKGHPPPALPPPSEPLPSSPPHGHTPPGPPSSSEPPSSPPQDHSPPTPSPSEPSPSTPPTGHTPAIPPSPSGPAPPSPPQVHNPPVKLSPPVASSPPAPSLPVHAPPPPHFPDFPSPPSTQPPVYCPRSPYPPSPPSYSPNPPLQHPTSPPPPLPVHSPPSPVYTSPSPLPLPCIQPPPPPPPDTQYSEPPPTPSSSIPYNSPPPPSPSPPPPPSPVYGGPLPPIYGVPYASPPPPPLY 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2945225 2947750 - CmoCh10G006420.1 Cmo10g00642 389988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00642 841 Pfam Leucine rich repeat N-terminal domain 82 114 IPR013210 -
Cmo10g00642 841 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 27 476 - -
Cmo10g00642 841 SUPERFAMILY L domain-like 88 358 - -
Cmo10g00642 841 MobiDBLite consensus disorder prediction 408 841 - -
Cmo10g00642 841 Pfam Leucine rich repeat 291 348 IPR001611 GO:0005515
Cmo10g00642 841 Gene3D Ribonuclease Inhibitor 242 371 IPR032675 -
Cmo10g00642 841 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 27 476 - -
Cmo10g00642 841 SMART LRR_typ_2 171 194 IPR003591 -
Cmo10g00642 841 SMART LRR_typ_2 313 337 IPR003591 -
Cmo10g00642 841 SMART LRR_typ_2 195 219 IPR003591 -
Cmo10g00642 841 SMART LRR_typ_2 289 312 IPR003591 -
Cmo10g00642 841 Gene3D Ribonuclease Inhibitor 78 241 IPR032675 -
Cmo10g00642 841 MobiDBLite consensus disorder prediction 400 841 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00642 Cmo12g01271 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00642 Cmo-Chr10:2945225 Cmo14g01778 Cmo-Chr14:13715371 2.02E-139 dispersed
Cmo10g00642 Cmo-Chr10:2945225 Cmo11g00596 Cmo-Chr11:2873279 0 wgd
Cmo10g00642 Cmo-Chr10:2945225 Cmo12g01271 Cmo-Chr12:11268328 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00642 - - cpep:111779752 836.254