Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00643 ATGGGTTCCTTCAAAAGTGATCAAAATGTGAGCTTTGCTGCTCCGAGGGCGTTTGGGAAGAGGCTGAAATCGGATCTCAAAGAGACGTTTTTCCCTGATGATCCGTTCAGGCAGTTTGGAGATGGCGGAGGGGCTGTGCAGCGAGTGAAAAAGGTCCTCAAGTATTTCGTTCCCATATTGGAATGGCTTCCTAAATACAACTTGAGTATGTTTAAGTATGATTTGCTTGCTGGTATTACCATTACCAGCCTCGCTATTCCCCAAGGCATCAGTTACGCCAAGCTCGCCACTCTCCCTCCCATCATTGGCCTTTATTCCAGCTTCGTTCCTCCACTTGTATATGCAGTGTTTGGAAGCTCCAAGCATCTGGCGGTGGGGACAGTGGCCGCATGTTCCTTGCTCATTTCGCAAATCATCGGACGAGTGGCGTCCCCGGAAGAAGAACCCACATTGTATCTCCACTTGGTTTTCACCGCCACCCTTGTTACCGGCGTCTTTCAGGCCACCTTAGGCTTTCTACGACTGGGAATTTTGGTAGATTTCTTATCGCACTCGACAATACTCGGGTTTATGGGAGGGACGGCTGTGATCATTTCCCTGCAACAGCTGAAAGGCATGCTTGGACTCACTCATTTCACCTCTAAAACTGACGTTTTTTCGGTACTTCACGCAGTGTTCACCCGTACAAATGAGTGGAAATGGCAAAGTGCTGTCGTCGGCATCGTCTTCCTTCTATTCCTTCAGTTTACAAGGTTCCTGAGAAACAGAAACCCCAAGCTATTCTGGGTGTCAGCGATGGCTCCCATGGTAACAGTGGTAGTCGGGTGTTTGTTTGCTTATTTCATCAATGGAAGTCAGCATGGAATCTTAACTGTGGGTCACTTGAGCAAAGGAATAAACCCTGTTTCCATTCACTTCCTCAACTTCGACTCCAAATATATATCAGTTGTCGTACAAACTGGCTTGATCACTGCCCTTGTGGCTTTGGCTGAAGGAATAGCAATTGGTCGGAGCTTTGCAATCATGAAAAATGAACAAATCGATGGGAACAAGGAGATGGTAGCCTTTGGTTTAATGAACATCCTCGGATCTTTCACTTCCTGCTACCTAACCACTGGGCCATTCTCAAAGACTGCAGTGAACTTCAATGCTGGGTGTAGGACAGCCATGTCAAACATAGTCATGGCGATCTTCATGGCTTTCACCCTCCTCTTTCTAGCTCCTCTCTTTAGCTACACACCTCTTGTAACCCTTTCCGCCATTATCATGTCCGCCATGTTTGGTCTCATCAAGTATGAAGAAATGTATCATCTTCTCAAGGTCGACAAGTTTGATTTCTGCATATGTATGGCGGCTTTCTTGGGCGTTGCCCTCTTAAGCATGGACGTTGGCATCATGCTTTCGGTGGGACTTGCTTTGCTGAGAGCTCTGCTTTACATGGCTAGACCAGCCACTTGCAAACTCGGGAAAATAACAAACTCCAGTTTGTATAGAGACGTGGAACAGTACCCAAATGCAACAAGAACCCCTGGAATTATTGTTCTTCAACTTGGTTCCCCTGTTTATTACGCCAACGCCAACTACATCAGAGAAAGGATTTTCAGATGGGTTCGTGATGAGCAGACCATATCTGATACCAACGATGGATCCGTCGAACATGTACTGCTGGAGTTGAGCGGAGTTACCTCCATCGACATGACAGGGATCGAAACTCTAGTTGAAATCCGCAGATCATTACAAGCAAACGGAATCCAGATGGGAATTATAAACCCAAGAATAGTAGTGATGGAGAAGATGATAGCTTCGGATTTCACAGAAACAATCGGGAAAGAGAACATTTATTTGTCGGTAGACGATGGAGTGGAAAGGTGCAGAGATTTGGTTCCCAAATTAAAGCAAACGGATGGAAGTGGTGAAAGTTCCATTAGCTTATGCACAGGAATTTGA 1947 46.07 MGSFKSDQNVSFAAPRAFGKRLKSDLKETFFPDDPFRQFGDGGGAVQRVKKVLKYFVPILEWLPKYNLSMFKYDLLAGITITSLAIPQGISYAKLATLPPIIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLISQIIGRVASPEEEPTLYLHLVFTATLVTGVFQATLGFLRLGILVDFLSHSTILGFMGGTAVIISLQQLKGMLGLTHFTSKTDVFSVLHAVFTRTNEWKWQSAVVGIVFLLFLQFTRFLRNRNPKLFWVSAMAPMVTVVVGCLFAYFINGSQHGILTVGHLSKGINPVSIHFLNFDSKYISVVVQTGLITALVALAEGIAIGRSFAIMKNEQIDGNKEMVAFGLMNILGSFTSCYLTTGPFSKTAVNFNAGCRTAMSNIVMAIFMAFTLLFLAPLFSYTPLVTLSAIIMSAMFGLIKYEEMYHLLKVDKFDFCICMAAFLGVALLSMDVGIMLSVGLALLRALLYMARPATCKLGKITNSSLYRDVEQYPNATRTPGIIVLQLGSPVYYANANYIRERIFRWVRDEQTISDTNDGSVEHVLLELSGVTSIDMTGIETLVEIRRSLQANGIQMGIINPRIVVMEKMIASDFTETIGKENIYLSVDDGVERCRDLVPKLKQTDGSGESSISLCTGI 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2947910 2951342 - CmoCh10G006430.1 Cmo10g00643 389989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00643 648 ProSitePatterns SLC26A transporters signature. 100 121 IPR018045 GO:0008271|GO:0008272
Cmo10g00643 648 SUPERFAMILY SpoIIaa-like 504 625 IPR036513 -
Cmo10g00643 648 TIGRFAM sulP: sulfate permease 58 619 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cmo10g00643 648 Pfam Sulfate permease family 71 452 IPR011547 GO:0016021
Cmo10g00643 648 Pfam STAS domain 503 619 IPR002645 -
Cmo10g00643 648 PANTHER SULFATE TRANSPORTER 3.5-RELATED 5 632 IPR030316 GO:1902358
Cmo10g00643 648 CDD STAS_SulP_like_sulfate_transporter 503 617 - -
Cmo10g00643 648 Gene3D STAS domain 497 627 IPR036513 -
Cmo10g00643 648 ProSiteProfiles STAS domain profile. 502 624 IPR002645 -
Cmo10g00643 648 PANTHER SULFATE TRANSPORTER 5 632 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00643 Cmo-Chr10:2947910 Cmo17g01178 Cmo-Chr17:9479063 0 dispersed
Cmo10g00643 Cmo-Chr10:2947910 Cmo11g00595 Cmo-Chr11:2867566 0 wgd
Cmo10g00643 Cmo-Chr10:2947910 Cmo17g00784 Cmo-Chr17:7547412 0 wgd
Cmo10g00643 Cmo-Chr10:2947910 Cmo08g00647 Cmo-Chr8:4222627 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00643 K17471 - csv:116402148 1092.41