Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo10g00657 | ATGTCGTCTCCGAGCTCTCCGCCGGCGCCTAGTACGACCTCACCCCTACCTCCGACCACCGACGCACCACCCCCGGCGGAGCCGTCTCTCTCACCGCCGTCTCCTGACGCTGCCTCTCAGCCTCCACCTGCTACATCCCTGCCGCCTTCTACCACTCCTTCGCCGCCGCCTCCGGACAGTGCTACTCCATCCCCGCCACCTCCGGACAGTGCTACTCCTTCGCCGCCGCCTCCGGACAGTGCTACTCCATCCCCACCGCCTCCTGACAGTGCTACTCCATCCCCGCCTACTACTTCTCCTTTACCACCTACAGCTCCTAAGAGCTCTTCGCCGCCGCCGCCGGACAGTGCCACTCCATCTCCGCCTACTTCTTTACCGCCTACATCGCCTTCGGGCTCTTCGCCGCCGCCGCCGCCGTCGAATTCTAGTACACCTACGAGTCCAGGAGGACATGTCGCTCCGCCGTCGAATTCTAGTACACCAACGAATCCGGGAGGAAATGAGGCTCCGCCGTCTTTCTCACCGTCGTCGGGAGTTTCGGCTGGACTTGTGACTGGAGTTGTCATTGCTGGAGTGGTGGTGGTGGTTGCTGCGTTCATTCTTTTGGTTTTGTGTTTAAGAAAGAAGAGAAGACGTGACGAGGAGTCGTACTACCGGCCGCCGCCACCGGGGGCGTTTAAAGATGGCCCATATGGTCCCCAACAGCACCACTGGCAATCACATCTGCCGCCGTTGCCGCCGACTAATCATGTCGTGGGGACAGTACCGAAGCCATCTCCTCCGCCAGCATCACGACCACCACCGTCTCCTTCACCAGCATCACGACCGCAGCCGTCACCTCTGACTATAAACAGCAGCGGAGGATCTGGATCTTATTATTCAGGGTCTGAATATTCGCATGCTCCTGCTCCTGCTCCATCTTCTATTCCCTTGGGCTACTCGCAAAGCAGCTTCACTTATGAAGAGTTAGCAATGGCGACAGACAGGTTTTCAGAAGCCAATCTCCTTGGACAAGGTGGGTTTGGTTATGTGCATAAAGGAGTCCTTCCAAACGGAAAGGAAGTGGCAGTGAAACAACTCAAGGCTGGAAGTGGACAGGGAGAGCGTGAATTTCAAGCAGAAGTGGAAATAATCAGCCGTGTTCATCATAGACATCTTGTTTCCTTGGTGGGGTATTGCATCACCGGCTCCCAAAGATTGCTGGTTTATGAATTTGTTCCAAACAACACATTGGAGTTCCACTTGCACGGGAAAGGACGACCCACCATGGATTGGCCAACGAGACTCAAAATTGCTCTTGGATCTGCCAAGGGATTGGCCTACCTTCATGAAGACTGTAATCCTAAGATCATTCATCGTGACATCAAAGCTGCAAATATACTTCTGGATCTCAAATTCGAAGCAATGGTTGCAGATTTTGGGCTTGCCAAATTGTCTTCTGATGTTAATACCCACGTTTCAACTCGAGTTATGGGAACTTTCGGCTACCTTGCTCCTGAATACGCTTCAAGTGGGAAACTCACTGATAAATCAGATGTCTTCTCCTTCGGAGTGATGCTTTTGGAGCTGATTACTGGGCGCAGACCTGTGGATACAACTCAATCATACATGGACGATGGACTGCTCGATTGGGCAAGGCCATTACTACTTAGGGCCGCAGAAGATGGGAACTACGATGGTCTAGTAGATCCAAAGCTGCGAGATAACTACGACCATAATGAGATGGGTCGGATGATTGCTTGTGCAGCTGCCTGTGTGCGCCATTCGGCGAGGCGCCGGCCACGGATGAGTCAAGTGGTTCATGCTCTTGAAGGTGAAGCCTCGCTTTCTGATCTTAACAAAGGGGTTCAGCCTGGACATAGCACCGTCTACAGTTCTCATGGAAGCTCCGACTACGACACATCTCAGTACAATGAGGACATGAAGAAGTTCAGGAAGATGGCATTGGCAAGCCAGGAGTACGGCAGCGAGTACAGCGAGCCGACGAGTGAGTATGGTTTGTATCCATCTGGGTCGAGTGGCGATGGCCCAACAACAAGGGAAATGGAAATGAGAACAATGAAGACAGAAAGTGGAGGTTCTTGA | 2085 | 53.24 | MSSPSSPPAPSTTSPLPPTTDAPPPAEPSLSPPSPDAASQPPPATSLPPSTTPSPPPPDSATPSPPPPDSATPSPPPPDSATPSPPPPDSATPSPPTTSPLPPTAPKSSSPPPPDSATPSPPTSLPPTSPSGSSPPPPPSNSSTPTSPGGHVAPPSNSSTPTNPGGNEAPPSFSPSSGVSAGLVTGVVIAGVVVVVAAFILLVLCLRKKRRRDEESYYRPPPPGAFKDGPYGPQQHHWQSHLPPLPPTNHVVGTVPKPSPPPASRPPPSPSPASRPQPSPLTINSSGGSGSYYSGSEYSHAPAPAPSSIPLGYSQSSFTYEELAMATDRFSEANLLGQGGFGYVHKGVLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTMDWPTRLKIALGSAKGLAYLHEDCNPKIIHRDIKAANILLDLKFEAMVADFGLAKLSSDVNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGVMLLELITGRRPVDTTQSYMDDGLLDWARPLLLRAAEDGNYDGLVDPKLRDNYDHNEMGRMIACAAACVRHSARRRPRMSQVVHALEGEASLSDLNKGVQPGHSTVYSSHGSSDYDTSQYNEDMKKFRKMALASQEYGSEYSEPTSEYGLYPSGSSGDGPTTREMEMRTMKTESGGS | 694 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3018920 | 3022066 | + | CmoCh10G006570.1 | Cmo10g00657 | 390003 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo10g00657 | 694 | Pfam | Protein tyrosine and serine/threonine kinase | 334 | 602 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo10g00657 | 694 | PANTHER | SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED | 92 | 683 | - | - | |
Cmo10g00657 | 694 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 92 | 683 | - | - | |
Cmo10g00657 | 694 | MobiDBLite | consensus disorder prediction | 249 | 277 | - | - | |
Cmo10g00657 | 694 | MobiDBLite | consensus disorder prediction | 211 | 299 | - | - | |
Cmo10g00657 | 694 | ProSiteProfiles | Protein kinase domain profile. | 330 | 609 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo10g00657 | 694 | MobiDBLite | consensus disorder prediction | 654 | 694 | - | - | |
Cmo10g00657 | 694 | Gene3D | Phosphorylase Kinase; domain 1 | 305 | 405 | - | - | |
Cmo10g00657 | 694 | Gene3D | Transferase(Phosphotransferase) domain 1 | 406 | 617 | - | - | |
Cmo10g00657 | 694 | MobiDBLite | consensus disorder prediction | 145 | 177 | - | - | |
Cmo10g00657 | 694 | SUPERFAMILY | Protein kinase-like (PK-like) | 307 | 603 | IPR011009 | - | |
Cmo10g00657 | 694 | MobiDBLite | consensus disorder prediction | 278 | 296 | - | - | |
Cmo10g00657 | 694 | MobiDBLite | consensus disorder prediction | 611 | 635 | - | - | |
Cmo10g00657 | 694 | PRINTS | Proline rich extensin signature | 1 | 17 | - | - | |
Cmo10g00657 | 694 | PRINTS | Proline rich extensin signature | 21 | 33 | - | - | |
Cmo10g00657 | 694 | PRINTS | Proline rich extensin signature | 37 | 58 | - | - | |
Cmo10g00657 | 694 | PRINTS | Proline rich extensin signature | 62 | 78 | - | - | |
Cmo10g00657 | 694 | ProSitePatterns | Protein kinases ATP-binding region signature. | 336 | 358 | IPR017441 | GO:0005524 | |
Cmo10g00657 | 694 | MobiDBLite | consensus disorder prediction | 1 | 144 | - | - | |
Cmo10g00657 | 694 | SMART | serkin_6 | 330 | 603 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo10g00657 | 694 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 450 | 462 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo10g00657 | 694 | MobiDBLite | consensus disorder prediction | 614 | 635 | - | - | |
Cmo10g00657 | 694 | MobiDBLite | consensus disorder prediction | 1 | 177 | - | - | |
Cmo10g00657 | 694 | MobiDBLite | consensus disorder prediction | 655 | 679 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo10g00657 | Cmo12g01280 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00836 | Cmo-Chr4:4161753 | Cmo10g00657 | Cmo-Chr10:3018920 | 3.14E-180 | dispersed | |
Cmo10g00657 | Cmo-Chr10:3018920 | Cmo15g00209 | Cmo-Chr15:1017698 | 7.47E-159 | dispersed | |
Cmo13g00872 | Cmo-Chr13:7931230 | Cmo10g00657 | Cmo-Chr10:3018920 | 2.63E-62 | dispersed | |
Cmo10g00657 | Cmo-Chr10:3018920 | Cmo11g00619 | Cmo-Chr11:2957148 | 0 | wgd | |
Cmo10g00657 | Cmo-Chr10:3018920 | Cmo12g01280 | Cmo-Chr12:11331888 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74618 | PF07714 | PK_Tyr_Ser-Thr | 2.10E-44 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo10g00657 | - | - | cpep:111779918 | 1001.89 |