Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00668 ATGGCGTCCTCTTTCTTAATGGTTGTACAGCACACCCACTCTTTCTCCTCCAACTCTCTCTGTAAGTTCTCACTTCTCGCCCTTTGTTTACCGCGTTTTCCCACTTTCTCTACTCCCAAACACACACTTTGTTTACTTAGAGTTGGAGAGGGAGTTGTAGGAGAACTTTCAACCACTAGCAGAGACCGTAGACTTTCCAATTCCATGATTCAGAAGCTAAACAAAAATGGGTCTCGTCATTTAGGGAATGGAAATGAAATACTCGTTAAGAAATGTGCGGAAGACCTTGTTTATTTAGAGGTGGAGGAGAGGGATGAGACACGGCTTGAGAGGGATAAAAACGCTAGGAATAGGAATGGCTCCGCCTCTGCTAATGGAATGAAAATGGGTGCTGGGGTTTCTTTCCTTAAGTCTAGAAGTGACAGTGGTTCCACAAAAGTTTCTAGGGGCGCAGGGGATGGTAGGAAGATTAAGGACAAGAGCAAGCGAAATCAGGTATTAGAGGTGAAGGAGAAATTTTCTGAAGAGAGTTACGATACCCCATTTAGAGCAGACTTGGATATGTGCTCAAAGACAGGGGATATAGCGGGCGCTATTGAATTGTATGAATGGGCTCAAAGGGAAGGAATTAAGCTGGAGCAATATCATTATGCCGTGATTTTGTATCTTTGTTCCTCAGCGGCTTTGGGTGTAATCCAGCCCGCAAAAAGTGGTAGAGATAATCGAACTTCAAGTTCACTAGCTTCGTCTAATATGGGTTCTTTCGAAAATCCCATTATACTGGATGAACAACATTCCTCCAAGATTAGTTCTGTTTCAAGGAGTGAAAGTTATGAAAGGACAGAAACGAATGCCAAAAATGATGGAAGTAAGGAGAATATAGTTCATACAAATAGATCTATGGTGTCCAAAGCTCGGATTATTGATGAGAAGAGCTATTCAAATATTTTGGTAGATGAGGATTTTAAAAAATATGCTGTCGAGAAAGGATTCGAGATCTATGAGAAGATGTGCACAGAAAAGATCCCAATGAATGAAGCAACCTTGACATCTGTGGCCCGAATGGCAATGTCCATGGGGGATGGTGATATTGCTTTAAATATGGTGAAGAAGATGAAGCCATTAGGAATTAATCCTAGACTGCGGTCTTATGGCCCTGCCCTTTCTGCTTTCTGCAATAATGGGGAAATAGATAAAGCATTTGAAGTTGAGAAGCACATGTTGGAGCATGGTGTGTATCCAGAAGAGCCTGAGTTGGCAGCACTTCTAAAAGTTAGTATAAACGCCAGCAACGCTGAGAAGGTGTATTATTTATTGGATAAACTGAGAACAAGTGTAAGACAAGTCTCACCCTCTACAGCAGATCTTATCAGTACCTGGTTCAAGAGCAAAGTTGCTACAAGAGTGGGGAAAGGAAAATTGGATAGAACAAAAATAAAGGAAGCAATGGAAAATTGTGGTGGAGGTTGGCATGGATTGGGATGGTTGGGAAGGGGAAAGTGGAGTGTATCATCTACAAATGTTGGAAAGGATGGTTTGTGTACATCCTGTGGGGAAAAGTTAGCAACAATTGATCTTGACCCTATTGAAACTGAGAATTTTGCTAAATCTGTTGCAGCTATAGCCACACAAAGAGAGAAAAACTCGAATTTTCAGAAATTTCAAGAATGGCTTGAATATTATGGACCATTTGAAGCAGTGATTGATGCTGCTAATGTAGGCCTATTTAGCCAAAGAAGATTCACACCATCTAAAGTCAATTTAATTGCCAACGGGATACGGCCGTTGCTTCCTTCAAAGAAGCGGCCTCTGATTGTATTGCACAACAGGCGAATTACTGGACGTAAGATGGATGAACCAGTAAATAAAGCATTGATTGAGAAGTGGAAAAATGCTGATGCACTGTATGCAACGCCCACTGGATCAAATGATGATTGGTACTGGTTGTATGCAGCAATCAAATTCAATTGCCTAATTGTGACGAACGATGAGATGAGAGATCATACATTCCAACTTCTTGGAAATGATTTCTTCCGTCGATGGAAAGAAAGGCATCAAGTGCACTTTAGTTTCTCCGCTACCGGTCCAGTGTTTCACATGCCCTCACCCTGTTCTGTCGTAATCCAGGAATCAGAGAATGGCCATTGGCATGTGCCCCTTGCTTCTGAGCATGGTTATGAAGAAGATAGAAAATGGCTATGTATTACAAGAGGGAATTCACAAGCACGCATGATGAGGCGAGAGTCTCCCCTCAAAGTTGAAGAACCAGAACCGCAGCCTCTTCCTCTCAGCAAAGGAAGTTTGGAAACTCCGGCCGACGTCGAAATCAAGAAACAACCCTCAAGCCAAGTCAGAAATTCTCCACGTGAAAATTACAGAAGTCTCGAACAAATATTTTCTTCAACTGTGTTCTTGAACAAATGCAACTTACTATCAGAAATAGAAGCCGCAGAGAAGCTTGGAGGCTGCACTATAGACTTCCAAATATGA 2490 41.97 MASSFLMVVQHTHSFSSNSLCKFSLLALCLPRFPTFSTPKHTLCLLRVGEGVVGELSTTSRDRRLSNSMIQKLNKNGSRHLGNGNEILVKKCAEDLVYLEVEERDETRLERDKNARNRNGSASANGMKMGAGVSFLKSRSDSGSTKVSRGAGDGRKIKDKSKRNQVLEVKEKFSEESYDTPFRADLDMCSKTGDIAGAIELYEWAQREGIKLEQYHYAVILYLCSSAALGVIQPAKSGRDNRTSSSLASSNMGSFENPIILDEQHSSKISSVSRSESYERTETNAKNDGSKENIVHTNRSMVSKARIIDEKSYSNILVDEDFKKYAVEKGFEIYEKMCTEKIPMNEATLTSVARMAMSMGDGDIALNMVKKMKPLGINPRLRSYGPALSAFCNNGEIDKAFEVEKHMLEHGVYPEEPELAALLKVSINASNAEKVYYLLDKLRTSVRQVSPSTADLISTWFKSKVATRVGKGKLDRTKIKEAMENCGGGWHGLGWLGRGKWSVSSTNVGKDGLCTSCGEKLATIDLDPIETENFAKSVAAIATQREKNSNFQKFQEWLEYYGPFEAVIDAANVGLFSQRRFTPSKVNLIANGIRPLLPSKKRPLIVLHNRRITGRKMDEPVNKALIEKWKNADALYATPTGSNDDWYWLYAAIKFNCLIVTNDEMRDHTFQLLGNDFFRRWKERHQVHFSFSATGPVFHMPSPCSVVIQESENGHWHVPLASEHGYEEDRKWLCITRGNSQARMMRRESPLKVEEPEPQPLPLSKGSLETPADVEIKKQPSSQVRNSPRENYRSLEQIFSSTVFLNKCNLLSEIEAAEKLGGCTIDFQI 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3055117 3058934 - CmoCh10G006680.1 Cmo10g00668 390014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00668 829 Gene3D Tetratricopeptide repeat domain 318 737 IPR011990 GO:0005515
Cmo10g00668 829 PANTHER UNCHARACTERIZED 128 756 - -
Cmo10g00668 829 Gene3D - 526 700 - -
Cmo10g00668 829 Pfam Pentacotripeptide-repeat region of PRORP 171 231 IPR033443 -
Cmo10g00668 829 Pfam Pentacotripeptide-repeat region of PRORP 320 466 IPR033443 -
Cmo10g00668 829 TIGRFAM PPR: pentatricopeptide repeat domain 383 414 IPR002885 -
Cmo10g00668 829 MobiDBLite consensus disorder prediction 107 162 - -
Cmo10g00668 829 MobiDBLite consensus disorder prediction 266 291 - -
Cmo10g00668 829 Pfam Protein-only RNase P 509 734 IPR031595 -
Cmo10g00668 829 CDD PIN_PRORP 566 689 - -
Cmo10g00668 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Cmo10g00668 829 MobiDBLite consensus disorder prediction 745 789 - -
Cmo10g00668 829 PANTHER OS02G0273800 PROTEIN 128 756 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00668 Cmo11g00626 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00668 Cmo-Chr10:3055117 Cmo01g00280 Cmo-Chr1:1324487 5.67E-08 dispersed
Cmo04g01002 Cmo-Chr4:5046428 Cmo10g00668 Cmo-Chr10:3055117 9.60E-121 transposed
Cmo10g00854 Cmo-Chr10:4039201 Cmo10g00668 Cmo-Chr10:3055117 5.50E-10 transposed
Cmo10g00668 Cmo-Chr10:3055117 Cmo11g00626 Cmo-Chr11:2988636 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00668 K18213 - csv:101210714 1229.16