Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00669 ATGGGTTCCAGGGGTAAAGACTCTACGACTCACCATCAGCCGTTATTGAGCAGTCTTGTTGTCCGGCCTTCAAATAGTGACGGGGGTGGTGGCGGAGTCGGTGGAACCAGTGGCGGCCGCGTTGGTCGTGGAAGCGATTATGAGGCGGGTGAGCTTTGTGTTGCCGCCTGCAAGAACTTAGATCTTGAGGAGGGCTTTGGTGGTCTCACACGGGGCCGTGAATTTGGTGGTGGGAGGGATCTTGGTAGGTATCGAGATACTTCGCCTCATTACAGTCGAAGAGTAAGTGGTGGCAGACCATTTGGGAGAGGTTTTGATGGCCCTGGACATGCTCCTGGGCCATTTAGAGGGGAACGTAGTAAAAATAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCTCAGATCCTTTATGTGACAACTTAAACTTTGCAAGACGAGAATTTTGTAACAACTGCAACAGACCCCGCACTGGAGCTGGTGGAAGTCCTCGAAGAGGAGGCTATGTTGGCCCACCATCCCTGCATTCTCCTCCTAGACGCTTTGCTGCCCACCCAATTGAACGTTCTCCCGGCAGGACTGTTAATGAATATAGGTCACCTCCCCGTGGTTGGGCCAGGGATGGTCCTAGGGAGATTGCAGCTGGTGGTCTGGCACCTCCGAGGTATGAAAGCAGGTATTCCGATCATCACCTGCGGAGAGATAGGGTTGATTATCTAGAAGACAGCTTCAGAGGAAGATCCAAGTTCGATAGGCTACCTCCTTCAGATTGGTCCCTTAGAGACAATGGAAGGGATGACTTCATCAACGAGAGGAAGGGATTTGAAAGAAGGCCACTATCACCAAAGGGATTTGAAAGAAGGCCACTATCACCAAAGGGATTTGAAAGAAGGCCGCAATCACCAAAGGGATTTGAAAGAAGGCCACTATCACCACCACCACTGTCATTGCTTCCTCAGCGTGGGCGATGGGCTCGCGACGTTAGAGAAAGGAGCCGTTCCCCAATCAGAGGTCCAGTCAGATCACCATTGAGAGTCCCTCTTCGGTCTCCATTAAGCGGTGGCCTTCCACCAAAAGACTATCGCAGAGATGTTTTTGTTGAAAGGGAGCGTGACGATAGGCGTGGCCTAGGACGAGATCGCGATGGAGGGAATCGGGAGACGGATAATTTACCCCCGCCAAATGCTCAAACTAATAGTGCGGAAGTCGTTTCATCTGATGTTCCTGCTAAGAAACTAGCTAGGCAGCTGAATTTTACGGGGCTTGGTGGTGCAGTCTTGCCAGACCTCCCTCATTTTCATCCTCAGCCTCGGTCTCAATCAGACTCACCGGCTGTGATGGTGGTGCAGAGTCAGTCGCAGCCAAAGTCCCCACAACATTTGATGGTTTCGCCCATTGGAACACAAGCGCCTCATCCTGTGAGAAAGCCAGATTCTCCGAAGTCAAGATCAAGGTCTAATGTTGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTATTGCGAGTGCTTTGCTTCTGGAATATACTGTGATGGTTGCAATTGCACAAATTGCTATAACAATGTGGAGAATGAAGCTTTCAGGAGAGAAGCAGTTGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAAATTGCTAGCAGCCCACATGGAACACGAGAGGTCAGGGATGAGGTTGGAGATGTGGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGTTTTCAGGCCAATATCCTCTGCTCTGAAAACTGTAAGTGCATGGACTGTAAGAATTTTGAAGGCAGTGAAGAGAGACAAGCTCTTTTCCATGGTGACCATGTCAGCAACATGGCTTATATTCAGCAGGCAGCCAATGCTGCAATAACTGGAGCTATTGGATCGTCTGGTTATGCTTACCTTCCCACTTCAAAGAAAAGAAAAGTCCCAGAGCTATGCTTTGCCTCTGTAGGGAAGGATCCCCCCCTCAACAGCATTCCACAATTTCATCAGGTGAATAATTTAATGTCTTCAGGCACGTCTACATCATCTCCCCTCCCAGTTGCTCATGCTGGCAGCCCTGCAGCACCGGGGACTTCAAAGTTTTCATTCAGGTCCTTATTAGCTGACCTCGTCCAGCCACACGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTGTCAAGTGAAGTTGCCAAGAACATAGCAGAAAAAAGAATTGCTGAGGAGCAGATAAATGATCCACTACAGATTTCCCGTGCTTCATCAGCTGGAGATGGGTCACAGCATCAGAAGGCAGATGAGAAAGCTGCCGATGGTGGGTGTGGAAGTTTAAACCAAAGTGAGATGCCTGTACATGATAATCACTCAGATAGTTCAGATATGACAAAATCAAGGCCAATGTCCCCAGGAACCTTAGCTTTAATGTGTGACGAACGAGATACAATGTTCATGGGAGCAGCTCCAGCTGATCGTTTGGCAGGGCATGGTTGCAACACATCATCGCATGTGCCTGATAAGTCTGTGTCAGAAGTCTACATAGAGCAGGAACGGATCGTGTTGACGAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTTGGAGAGATTAAGGAAACAAACTTCACGTCTAGAAGCGAAGAGAGGAGCGAAAATCAAAGCAACAATTTCACAACAAATAGCGGATGCGAACAGGGAACTATCGACAATGGGGTCATAAAAAATGTCGCTCTCTCGGCACCCATAATACCGCAAGTCGGTACCTCAGCTGGTCGTCCTAGTAATGATCTGCTACCCAGAATTCTACCCCTTCCTGAAAATGGGAAGAGTAAACCAGAAGTTGACAGAGAAGTGTAG 2916 48.08 MGSRGKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGSDYEAGELCVAACKNLDLEEGFGGLTRGREFGGGRDLGRYRDTSPHYSRRVSGGRPFGRGFDGPGHAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRTGAGGSPRRGGYVGPPSLHSPPRRFAAHPIERSPGRTVNEYRSPPRGWARDGPREIAAGGLAPPRYESRYSDHHLRRDRVDYLEDSFRGRSKFDRLPPSDWSLRDNGRDDFINERKGFERRPLSPKGFERRPLSPKGFERRPQSPKGFERRPLSPPPLSLLPQRGRWARDVRERSRSPIRGPVRSPLRVPLRSPLSGGLPPKDYRRDVFVERERDDRRGLGRDRDGGNRETDNLPPPNAQTNSAEVVSSDVPAKKLARQLNFTGLGGAVLPDLPHFHPQPRSQSDSPAVMVVQSQSQPKSPQHLMVSPIGTQAPHPVRKPDSPKSRSRSNVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCTNCYNNVENEAFRREAVETTLERNPNAFRPKIASSPHGTREVRDEVGDVVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHVSNMAYIQQAANAAITGAIGSSGYAYLPTSKKRKVPELCFASVGKDPPLNSIPQFHQVNNLMSSGTSTSSPLPVAHAGSPAAPGTSKFSFRSLLADLVQPHDLKELCSVLVVLSSEVAKNIAEKRIAEEQINDPLQISRASSAGDGSQHQKADEKAADGGCGSLNQSEMPVHDNHSDSSDMTKSRPMSPGTLALMCDERDTMFMGAAPADRLAGHGCNTSSHVPDKSVSEVYIEQERIVLTKFRDCLNKLITLGEIKETNFTSRSEERSENQSNNFTTNSGCEQGTIDNGVIKNVALSAPIIPQVGTSAGRPSNDLLPRILPLPENGKSKPEVDREV 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3059747 3071798 - CmoCh10G006690.1 Cmo10g00669 390015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00669 971 MobiDBLite consensus disorder prediction 76 92 - -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 68 128 - -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 773 824 - -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 1 42 - -
Cmo10g00669 971 PANTHER TESMIN/TSO1-RELATED 436 918 IPR028307 -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 391 406 - -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 437 465 - -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 900 917 - -
Cmo10g00669 971 SUPERFAMILY Ran binding protein zinc finger-like 121 160 IPR036443 -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 429 497 - -
Cmo10g00669 971 ProSiteProfiles CRC domain profile. 498 622 IPR005172 -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 895 917 - -
Cmo10g00669 971 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 436 918 - -
Cmo10g00669 971 Gene3D - 119 160 - -
Cmo10g00669 971 ProSitePatterns Zinc finger RanBP2-type signature. 133 154 IPR001876 -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 477 497 - -
Cmo10g00669 971 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 499 534 IPR005172 -
Cmo10g00669 971 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 585 619 IPR005172 -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 155 225 - -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 362 388 - -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 938 971 - -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 1 24 - -
Cmo10g00669 971 ProSiteProfiles Zinc finger RanBP2 type profile. 129 160 IPR001876 -
Cmo10g00669 971 SMART zf_4 131 157 IPR001876 -
Cmo10g00669 971 SMART CXC_2 497 537 IPR033467 -
Cmo10g00669 971 SMART CXC_2 582 623 IPR033467 -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 252 305 - -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 252 408 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00669 - - - csv:101222405 905.205
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00727 Cmo-Chr1:3748135 Cmo10g00669 Cmo-Chr10:3059747 1.15E-07 dispersed
Cmo06g01394 Cmo-Chr6:10217110 Cmo10g00669 Cmo-Chr10:3059747 1.06E-30 dispersed
Cmo08g01108 Cmo-Chr8:7086479 Cmo10g00669 Cmo-Chr10:3059747 4.58E-34 dispersed
Cmo10g00669 Cmo-Chr10:3059747 Cmo11g00626 Cmo-Chr11:2988636 0 dispersed
Cmo13g00033 Cmo-Chr13:217968 Cmo10g00669 Cmo-Chr10:3059747 2.54E-07 dispersed
Cmo11g00627 Cmo-Chr11:3000920 Cmo10g00669 Cmo-Chr10:3059747 5.85E-13 transposed
Cmo10g00669 Cmo-Chr10:3059747 Cmo12g01288 Cmo-Chr12:11365188 5.74E-132 wgd
Cmo10g00669 Cmo-Chr10:3059747 Cmo05g01354 Cmo-Chr5:10498359 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g317 . . . . Bpe01g00537 . . Bma11g00523 Cmo10g00669 . . . . . . Cpe04g01121 Cpe18g00420 . . . . . . . . . . . . . . . . Cone4ag0741 . Lsi06g00856 . . . . Blo14g00501 Bda02g00437 . . . . . . . . Cma10g00635 Cma11g00619 Car10g00583 Car11g00500 . . . . . . . . . . . . . . . . . . Chy02g01849 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo05g01354 CST 153 582 CPP Transcription Factor Family AT2G20110 60.2 4.3e-137 485.7
Cmo11g00626 CST 94 474 CPP Transcription Factor Family AT2G20110 54.0 4.9e-104 375.9
Cmo12g01288 CST 131 346 CPP Transcription Factor Family AT2G20110 74.1 3.7e-96 349.7
Cmo12g01288 CST 135 333 CPP Transcription Factor Family AT5G25790 60.5 1.9e-69 260.8
Cmo05g01354 CST 156 589 CPP Transcription Factor Family AT4G29000 61.8 2.6e-146 516.5
Cmo10g00669 . 405 897 CPP Transcription Factor Family AT4G29000 53.2 1.8e-139 493.8
Cmo11g00626 CST 94 514 CPP Transcription Factor Family AT4G29000 55.1 4.1e-120 429.5
Cmo12g01288 CST 140 354 CPP Transcription Factor Family AT4G29000 75.9 8.3e-97 352.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10470 PF03638 TCR 5.70E-12 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00669 Cmo_Chr10 FPKM 6.105766 5.925012 1.266693 1.506759 1.311323 1.113888 1.465608 2.419031 2.455808 2.455969