Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00669 ATGGGTTCCAGGGGTAAAGACTCTACGACTCACCATCAGCCGTTATTGAGCAGTCTTGTTGTCCGGCCTTCAAATAGTGACGGGGGTGGTGGCGGAGTCGGTGGAACCAGTGGCGGCCGCGTTGGTCGTGGAAGCGATTATGAGGCGGGTGAGCTTTGTGTTGCCGCCTGCAAGAACTTAGATCTTGAGGAGGGCTTTGGTGGTCTCACACGGGGCCGTGAATTTGGTGGTGGGAGGGATCTTGGTAGGTATCGAGATACTTCGCCTCATTACAGTCGAAGAGTAAGTGGTGGCAGACCATTTGGGAGAGGTTTTGATGGCCCTGGACATGCTCCTGGGCCATTTAGAGGGGAACGTAGTAAAAATAATCCAAATGTGCGTCCTAGGGATGGGGATTGGTATTGCTCAGATCCTTTATGTGACAACTTAAACTTTGCAAGACGAGAATTTTGTAACAACTGCAACAGACCCCGCACTGGAGCTGGTGGAAGTCCTCGAAGAGGAGGCTATGTTGGCCCACCATCCCTGCATTCTCCTCCTAGACGCTTTGCTGCCCACCCAATTGAACGTTCTCCCGGCAGGACTGTTAATGAATATAGGTCACCTCCCCGTGGTTGGGCCAGGGATGGTCCTAGGGAGATTGCAGCTGGTGGTCTGGCACCTCCGAGGTATGAAAGCAGGTATTCCGATCATCACCTGCGGAGAGATAGGGTTGATTATCTAGAAGACAGCTTCAGAGGAAGATCCAAGTTCGATAGGCTACCTCCTTCAGATTGGTCCCTTAGAGACAATGGAAGGGATGACTTCATCAACGAGAGGAAGGGATTTGAAAGAAGGCCACTATCACCAAAGGGATTTGAAAGAAGGCCACTATCACCAAAGGGATTTGAAAGAAGGCCGCAATCACCAAAGGGATTTGAAAGAAGGCCACTATCACCACCACCACTGTCATTGCTTCCTCAGCGTGGGCGATGGGCTCGCGACGTTAGAGAAAGGAGCCGTTCCCCAATCAGAGGTCCAGTCAGATCACCATTGAGAGTCCCTCTTCGGTCTCCATTAAGCGGTGGCCTTCCACCAAAAGACTATCGCAGAGATGTTTTTGTTGAAAGGGAGCGTGACGATAGGCGTGGCCTAGGACGAGATCGCGATGGAGGGAATCGGGAGACGGATAATTTACCCCCGCCAAATGCTCAAACTAATAGTGCGGAAGTCGTTTCATCTGATGTTCCTGCTAAGAAACTAGCTAGGCAGCTGAATTTTACGGGGCTTGGTGGTGCAGTCTTGCCAGACCTCCCTCATTTTCATCCTCAGCCTCGGTCTCAATCAGACTCACCGGCTGTGATGGTGGTGCAGAGTCAGTCGCAGCCAAAGTCCCCACAACATTTGATGGTTTCGCCCATTGGAACACAAGCGCCTCATCCTGTGAGAAAGCCAGATTCTCCGAAGTCAAGATCAAGGTCTAATGTTGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTATTGCGAGTGCTTTGCTTCTGGAATATACTGTGATGGTTGCAATTGCACAAATTGCTATAACAATGTGGAGAATGAAGCTTTCAGGAGAGAAGCAGTTGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAAATTGCTAGCAGCCCACATGGAACACGAGAGGTCAGGGATGAGGTTGGAGATGTGGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGTTTTCAGGCCAATATCCTCTGCTCTGAAAACTGTAAGTGCATGGACTGTAAGAATTTTGAAGGCAGTGAAGAGAGACAAGCTCTTTTCCATGGTGACCATGTCAGCAACATGGCTTATATTCAGCAGGCAGCCAATGCTGCAATAACTGGAGCTATTGGATCGTCTGGTTATGCTTACCTTCCCACTTCAAAGAAAAGAAAAGTCCCAGAGCTATGCTTTGCCTCTGTAGGGAAGGATCCCCCCCTCAACAGCATTCCACAATTTCATCAGGTGAATAATTTAATGTCTTCAGGCACGTCTACATCATCTCCCCTCCCAGTTGCTCATGCTGGCAGCCCTGCAGCACCGGGGACTTCAAAGTTTTCATTCAGGTCCTTATTAGCTGACCTCGTCCAGCCACACGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTGTCAAGTGAAGTTGCCAAGAACATAGCAGAAAAAAGAATTGCTGAGGAGCAGATAAATGATCCACTACAGATTTCCCGTGCTTCATCAGCTGGAGATGGGTCACAGCATCAGAAGGCAGATGAGAAAGCTGCCGATGGTGGGTGTGGAAGTTTAAACCAAAGTGAGATGCCTGTACATGATAATCACTCAGATAGTTCAGATATGACAAAATCAAGGCCAATGTCCCCAGGAACCTTAGCTTTAATGTGTGACGAACGAGATACAATGTTCATGGGAGCAGCTCCAGCTGATCGTTTGGCAGGGCATGGTTGCAACACATCATCGCATGTGCCTGATAAGTCTGTGTCAGAAGTCTACATAGAGCAGGAACGGATCGTGTTGACGAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTTGGAGAGATTAAGGAAACAAACTTCACGTCTAGAAGCGAAGAGAGGAGCGAAAATCAAAGCAACAATTTCACAACAAATAGCGGATGCGAACAGGGAACTATCGACAATGGGGTCATAAAAAATGTCGCTCTCTCGGCACCCATAATACCGCAAGTCGGTACCTCAGCTGGTCGTCCTAGTAATGATCTGCTACCCAGAATTCTACCCCTTCCTGAAAATGGGAAGAGTAAACCAGAAGTTGACAGAGAAGTGTAG 2916 48.08 MGSRGKDSTTHHQPLLSSLVVRPSNSDGGGGGVGGTSGGRVGRGSDYEAGELCVAACKNLDLEEGFGGLTRGREFGGGRDLGRYRDTSPHYSRRVSGGRPFGRGFDGPGHAPGPFRGERSKNNPNVRPRDGDWYCSDPLCDNLNFARREFCNNCNRPRTGAGGSPRRGGYVGPPSLHSPPRRFAAHPIERSPGRTVNEYRSPPRGWARDGPREIAAGGLAPPRYESRYSDHHLRRDRVDYLEDSFRGRSKFDRLPPSDWSLRDNGRDDFINERKGFERRPLSPKGFERRPLSPKGFERRPQSPKGFERRPLSPPPLSLLPQRGRWARDVRERSRSPIRGPVRSPLRVPLRSPLSGGLPPKDYRRDVFVERERDDRRGLGRDRDGGNRETDNLPPPNAQTNSAEVVSSDVPAKKLARQLNFTGLGGAVLPDLPHFHPQPRSQSDSPAVMVVQSQSQPKSPQHLMVSPIGTQAPHPVRKPDSPKSRSRSNVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCTNCYNNVENEAFRREAVETTLERNPNAFRPKIASSPHGTREVRDEVGDVVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHVSNMAYIQQAANAAITGAIGSSGYAYLPTSKKRKVPELCFASVGKDPPLNSIPQFHQVNNLMSSGTSTSSPLPVAHAGSPAAPGTSKFSFRSLLADLVQPHDLKELCSVLVVLSSEVAKNIAEKRIAEEQINDPLQISRASSAGDGSQHQKADEKAADGGCGSLNQSEMPVHDNHSDSSDMTKSRPMSPGTLALMCDERDTMFMGAAPADRLAGHGCNTSSHVPDKSVSEVYIEQERIVLTKFRDCLNKLITLGEIKETNFTSRSEERSENQSNNFTTNSGCEQGTIDNGVIKNVALSAPIIPQVGTSAGRPSNDLLPRILPLPENGKSKPEVDREV 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3059747 3071798 - CmoCh10G006690.1 Cmo10g00669 390015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00669 971 MobiDBLite consensus disorder prediction 76 92 - -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 68 128 - -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 773 824 - -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 1 42 - -
Cmo10g00669 971 PANTHER TESMIN/TSO1-RELATED 436 918 IPR028307 -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 391 406 - -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 437 465 - -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 900 917 - -
Cmo10g00669 971 SUPERFAMILY Ran binding protein zinc finger-like 121 160 IPR036443 -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 429 497 - -
Cmo10g00669 971 ProSiteProfiles CRC domain profile. 498 622 IPR005172 -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 895 917 - -
Cmo10g00669 971 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 436 918 - -
Cmo10g00669 971 Gene3D - 119 160 - -
Cmo10g00669 971 ProSitePatterns Zinc finger RanBP2-type signature. 133 154 IPR001876 -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 477 497 - -
Cmo10g00669 971 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 499 534 IPR005172 -
Cmo10g00669 971 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 585 619 IPR005172 -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 155 225 - -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 362 388 - -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 938 971 - -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 1 24 - -
Cmo10g00669 971 ProSiteProfiles Zinc finger RanBP2 type profile. 129 160 IPR001876 -
Cmo10g00669 971 SMART zf_4 131 157 IPR001876 -
Cmo10g00669 971 SMART CXC_2 497 537 IPR033467 -
Cmo10g00669 971 SMART CXC_2 582 623 IPR033467 -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 252 305 - -
Cmo10g00669 971 MobiDBLite consensus disorder prediction 252 408 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00727 Cmo-Chr1:3748135 Cmo10g00669 Cmo-Chr10:3059747 1.15E-07 dispersed
Cmo06g01394 Cmo-Chr6:10217110 Cmo10g00669 Cmo-Chr10:3059747 1.06E-30 dispersed
Cmo08g01108 Cmo-Chr8:7086479 Cmo10g00669 Cmo-Chr10:3059747 4.58E-34 dispersed
Cmo10g00669 Cmo-Chr10:3059747 Cmo11g00626 Cmo-Chr11:2988636 0 dispersed
Cmo13g00033 Cmo-Chr13:217968 Cmo10g00669 Cmo-Chr10:3059747 2.54E-07 dispersed
Cmo11g00627 Cmo-Chr11:3000920 Cmo10g00669 Cmo-Chr10:3059747 5.85E-13 transposed
Cmo10g00669 Cmo-Chr10:3059747 Cmo12g01288 Cmo-Chr12:11365188 5.74E-132 wgd
Cmo10g00669 Cmo-Chr10:3059747 Cmo05g01354 Cmo-Chr5:10498359 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10470 PF03638 TCR 5.70E-12 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00669 - - csv:101222405 905.205