Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00684 ATGGGTTGCGTTTTTTCGAGGGTTTGTATTGGCGAGGAAACTACTTCAAGATCTTCGAGAATCGCTGAAGCCCAAATTGCCAAGACTGCCGCTGAAATCGATACGATCTCTTCTTCGTCTTCTAATAGCCGAGAAGGCGAAATCGGCGACCAACTAAATCGATTGAATTCAAACAACAGAGATTCAGAAGTTGGAATCACGAGGCTGTCGAGAGTTTCTTCCCAGTTCTTGCCCGCCGAGGGGTCTCGAACCATCAAAGTTCCTTCCGGGAACTTCAAATTACAATATTCGTTTCTTTCGCAAAGAGGGTATTATCCCGATGCCCTTGATAAGGCAAATCAAGACAGTTTTTGCATCCACACCCCATTTGGGAACAGCCCAGATGACCATTTCTTTGGGGTTTTCGATGGGCATGGGGAATTTGGAACACAGTGCTCGCAGTTTGTTAAACGGAAGCTCTGTGAAAATTTACTTAGAAATAGTAGGTTCCACACTGACGCTGTTGAAGCTTGTCATGCGGCTTATTTAACCACTAATTCACAGTTGCACGCAGATATCTTGGATGATAGCATGAGTGGTACTACTGCTATTACTGTTTTAGTTAGAGGTAGGACTATATATGTTGCTAATTCAGGTGATTCGAGAGCGGTTATAGCAGAGCGGAGAGGGAAGGAAGTCGTGGCTGTCGACCTCTCAATCGATCAAACTCCGTTCCGAACCGATGAAGTGGAACGTGTTAAGCTTTGTGGTGCTAGAGTTCTTACACTTGATCAGATTGAGGGGCTGAAGAACCCTGAGATTCAGTTCTGGGGTACTGAAGAAGGAGATGATGGTGATCCTCCTAGGCTTTGGGTACCTAATGGGATGTACCCTGGCACTGCTTTCACAAGAAGTATAGGCGACTCGATTGCCGAGACTATTGGCGTTGTTGCTACGCCTGAAATTGTTGTTCTGGAGCTGACACCAGATCATCCTTTCTTTGTTGTTGCTAGTGATGGGGTATTTGAGTTTCTTTCGAGCCAAACCGTGGTCGACATGGTTTCTAAATATAAAGATCCCCGTGATGCTTGTGCTGCAATTGTGGCTGAGTCCTATAAACTTTGGCTTCAATTTGAGACTCGAACAGACGATATCACGGTTATCGTGGTGCATATCAATGGACTAACCAATACTGTTACTAGTGAATCGACAAGATCCGTTGGAGGTGGTATCGTTCCATCTGCTCTTCCTCAAGTCGTGGAGGTGACAGGATCAGAGTCTCCTTCTACCTTTGGCTGGAACAGAAACAACCGTGCAAGGCAAGATTTGTCAAGGGCACGTCTCCGGGCTATCGAGAGTTCCCTAGAGAACGGGCAAGTCTGGGTGCCTCCATCTCCAGCTCACAGGAAGTCATGGGAAGAAGAAGCACATATTGAACGAGCATTGCACGACCATTTCCTCTTCAGAAAACTGACTGATTCTCAGTGCCAAGTCTTACTAGATTGTATGCAAAGAGTTGAGGTCATACCCGGGCAAATCGTAGTCGAACAAGGTGGGGAAGGTGACTGTTTTTATGTGGTTGGCAGTGGAGAATTTGAGGTCTTGGCAACCCAGGAAGAAAGCCATGGAGACGTTCCTCGAATTCTGCAACACTACACAGCTGAGAAGCTATCTTCCTTCGGGGAACTGGCTTTGATGTATAACAAACCACTTCAAGCCTCAGTACGTGCTGTTACAAGCGGGACGCTTTGGGCTTTGAAAAGAGAGGACTTTCGTGGCATTCTTATATCAGAATTTTCGAACTTGTCATCTTTGAAATCTCTTCGATCTGTCGACCTTTTGTCGAAGTTAACAATCTTGCAATTGAGTCGCATTGCAGATTGCCTTTCTGAAGTTACCTTCGCAGATGGGCAGCTGATTGTTGATGGGACGGAAGGCGGCTCATGTGCACTGCACATTATTCAAAAGGGACGAGTGAGGATCACTTTCGATGCGGAGTTAATGAGCAGTTCAAATGTTTACAGCTTCAATTATGCCAGTCAAGAGGAGGATGATGCCGCACGGAGTGGTAACGAGATCGTAGCTATTAAGAAAGAGGGAAGTTATTTTGGTGAATGGGGACTTCTTGGTGAGCATGTGGGCTTCTTACAAGCAGTTGCTGTAGGAGATGTTGTGTGTTCTATTTTAACAAAGGAAAAGTTTGAATCAGTTGTTGGCCCTTTACCAAAGCTCTCTCAAGATGATCAAAAGGCGAAGGAACATTCTTCAGACACTCTCCATCACTCAGACAAAATTCTCGACATTTCAGCTATTCCGAAAGTCGAGCTCGCTGATCTGGAGTGGAAAACGTGTTTATATTCCACAGAATACAGTGAAATCGGTCTAGTTCGGTTAAGGAACACAGAAACTATGCTTAGTTTAAAAAGGTTTACAAGACAGAAGGTCAAAAGGCTGGGACTTGAAGCACAAGTTTCAAAGGAGAAAGATCTTATGAAGAGCATCAGTTCTTCAGCATGTGTGCCGCAAATTCTCTGCACTTGTTTAGACCAATCACATGCTGGCATATTGCTAAAAACTCGCCTTGCTTGTCCTTTGTCTTCGATACTTCAAGTCCCGCTCGATGAATCTTCTGCACGTTTCTTCGCAGCCTCTCTTGTTATGGCAGTGGAAGATTTGCACAAGCTTGGTGTTCTCCACAGAGGAATCTCCCCTGATGTTCTAATGTTGAATCAAACCGGACACATACAGTTAGTAGACTTCAGATATGGAAAACGAACATCGGGCGAGAGAACGTATACTATTTGCGGGGCGGCCGACTTCTTAGCTCCCGAGATAGTTCAGGGCAATGGCCATGGTTTCGCTGCTGACTGGTGGGCACTGGGAGTCTTAATCTATTTCATGCTGAAAGGTAAAATGCCGTTCGGATCATGGCGACAAGGCGAGCTCGACACGTTTTCGAAGATCGCAAGAGGACAATTAAGTCTTCCCCAAATTTTCAGTCATGAAGCAATTGATCTCATCGTCAAGTTACTTGAAGTTGATGAGAAGAAAAGACTTGGAAACGAGAATCAAAACTCTGTTAGAAGTCATCCCTGGTTCGATGGCATTGATTGGAAGGGAATCCACGACGGTACCTTTCCCATTCCCGAGTCGATTACTTCTCGTGTCGCTCGATATTTGGAGAGCTACCCTGAAGATTACAGTATTCCTTTAGTCAAACCAACTCAAGATCGTGATGAACTGGATGTCGCCGAGTGGGTCAACGACTGGTAA 3252 45.36 MGCVFSRVCIGEETTSRSSRIAEAQIAKTAAEIDTISSSSSNSREGEIGDQLNRLNSNNRDSEVGITRLSRVSSQFLPAEGSRTIKVPSGNFKLQYSFLSQRGYYPDALDKANQDSFCIHTPFGNSPDDHFFGVFDGHGEFGTQCSQFVKRKLCENLLRNSRFHTDAVEACHAAYLTTNSQLHADILDDSMSGTTAITVLVRGRTIYVANSGDSRAVIAERRGKEVVAVDLSIDQTPFRTDEVERVKLCGARVLTLDQIEGLKNPEIQFWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVATPEIVVLELTPDHPFFVVASDGVFEFLSSQTVVDMVSKYKDPRDACAAIVAESYKLWLQFETRTDDITVIVVHINGLTNTVTSESTRSVGGGIVPSALPQVVEVTGSESPSTFGWNRNNRARQDLSRARLRAIESSLENGQVWVPPSPAHRKSWEEEAHIERALHDHFLFRKLTDSQCQVLLDCMQRVEVIPGQIVVEQGGEGDCFYVVGSGEFEVLATQEESHGDVPRILQHYTAEKLSSFGELALMYNKPLQASVRAVTSGTLWALKREDFRGILISEFSNLSSLKSLRSVDLLSKLTILQLSRIADCLSEVTFADGQLIVDGTEGGSCALHIIQKGRVRITFDAELMSSSNVYSFNYASQEEDDAARSGNEIVAIKKEGSYFGEWGLLGEHVGFLQAVAVGDVVCSILTKEKFESVVGPLPKLSQDDQKAKEHSSDTLHHSDKILDISAIPKVELADLEWKTCLYSTEYSEIGLVRLRNTETMLSLKRFTRQKVKRLGLEAQVSKEKDLMKSISSSACVPQILCTCLDQSHAGILLKTRLACPLSSILQVPLDESSARFFAASLVMAVEDLHKLGVLHRGISPDVLMLNQTGHIQLVDFRYGKRTSGERTYTICGAADFLAPEIVQGNGHGFAADWWALGVLIYFMLKGKMPFGSWRQGELDTFSKIARGQLSLPQIFSHEAIDLIVKLLEVDEKKRLGNENQNSVRSHPWFDGIDWKGIHDGTFPIPESITSRVARYLESYPEDYSIPLVKPTQDRDELDVAEWVNDW 1083
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3120320 3125410 + CmoCh10G006840.1 Cmo10g00684 390030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00684 1083 Pfam Protein phosphatase 2C 122 363 IPR001932 -
Cmo10g00684 1083 ProSitePatterns PPM-type phosphatase domain signature. 131 139 IPR000222 GO:0043169
Cmo10g00684 1083 Gene3D Phosphorylase Kinase; domain 1 771 856 - -
Cmo10g00684 1083 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 28 1076 - -
Cmo10g00684 1083 Gene3D Jelly Rolls 596 751 IPR014710 -
Cmo10g00684 1083 MobiDBLite consensus disorder prediction 34 59 - -
Cmo10g00684 1083 Pfam Protein kinase domain 783 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00684 1083 CDD CAP_ED 480 588 IPR000595 -
Cmo10g00684 1083 SUPERFAMILY cAMP-binding domain-like 461 589 IPR018490 -
Cmo10g00684 1083 CDD CAP_ED 606 739 IPR000595 -
Cmo10g00684 1083 ProSiteProfiles cAMP/cGMP binding motif profile. 606 733 IPR000595 -
Cmo10g00684 1083 CDD PP2Cc 111 385 IPR001932 -
Cmo10g00684 1083 SUPERFAMILY cAMP-binding domain-like 598 737 IPR018490 -
Cmo10g00684 1083 Gene3D Transferase(Phosphotransferase) domain 1 857 1038 - -
Cmo10g00684 1083 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 28 1076 - -
Cmo10g00684 1083 SMART serkin_6 779 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00684 1083 Gene3D - 89 386 IPR036457 -
Cmo10g00684 1083 SMART PP2C_4 91 383 IPR001932 -
Cmo10g00684 1083 ProSiteProfiles cAMP/cGMP binding motif profile. 480 588 IPR000595 -
Cmo10g00684 1083 SUPERFAMILY Protein kinase-like (PK-like) 759 1056 IPR011009 -
Cmo10g00684 1083 Pfam Cyclic nucleotide-binding domain 500 588 IPR000595 -
Cmo10g00684 1083 Gene3D Jelly Rolls 449 588 IPR014710 -
Cmo10g00684 1083 ProSiteProfiles PPM-type phosphatase domain profile. 95 385 IPR001932 -
Cmo10g00684 1083 PRINTS cAMP-dependent protein kinase signature 501 515 - -
Cmo10g00684 1083 PRINTS cAMP-dependent protein kinase signature 516 530 - -
Cmo10g00684 1083 PRINTS cAMP-dependent protein kinase signature 551 560 - -
Cmo10g00684 1083 PRINTS cAMP-dependent protein kinase signature 727 739 - -
Cmo10g00684 1083 SUPERFAMILY PP2C-like 83 387 IPR036457 -
Cmo10g00684 1083 ProSiteProfiles Protein kinase domain profile. 772 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00684 1083 SMART cnmp_10 480 603 IPR000595 -
Cmo10g00684 1083 SMART cnmp_10 606 746 IPR000595 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00684 Cmo11g00639 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01158 Cmo-Chr8:7400661 Cmo10g00684 Cmo-Chr10:3120320 8.76E-143 dispersed
Cmo10g00684 Cmo-Chr10:3120320 Cmo17g00274 Cmo-Chr17:1648265 4.15E-142 dispersed
Cmo10g00684 Cmo-Chr10:3120320 Cmo11g00639 Cmo-Chr11:3071263 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74619 PF00069 Pkinase 2.90E-33 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00684 - - cpep:111780232 2099.32