Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00689 ATGCCCCTGCTTATTGAGAATGACTCTACAACTTTCAGCTTCTCCTCGCCGTCGCCGTCGCCGTCGCCGTCTTCGTCGGGGAGTTTATCCATGGTTCTATTAGGGGAGAGTGATCAGTCAGGGACGGCGGTAGACTCCAATCGGAAACGAGCCAAACGGCCGAGAGAAAACAGCAACAGCAAACACCCACTCTTCCGTGGGGTCCGAATGAGGGCATGGGGGAAATGGGTGTCCGAAATTCGTGAGCCTCGAAAGAAGAGTCGGATCTGGCTTGGCACTTTCTCTACCCCTGAAATGGCCGCACGTGCCCACGACGTTGCCGCTCTCACCATTAAAGGAAACTCCGCCATTCTCAACTTCCCTGAACTCGCCGATCAATTCCCCCGCCCCGCTTCCAACTCCCCTCGCGACGTTCAAGCCGCCGCCGCCAAAGCCGCCTCCATGGAAATCCCAACTCCCCCACCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTATGTCCATCGACGCCGGAGGAACTGAGTGAAATAGTGCAACTCCCGAGTTTAGGAACGAGTTACGAAACGGCCGAGTTAGGAAACGAATTCGTATTCGTCGACTCAGTGGAAGGTTGGCTTTATTCATACCCATGGTATCAAAGAGTGAATAACAATGCAGATGAAGAACAGAGCCATGGCTTCTTCAGAGACCAGATTTCAACAGACTCCATAACTCCTCCATCTTCAAGCTTCGAAGCTTTCTTATGGCAATATTAA 756 53.04 MPLLIENDSTTFSFSSPSPSPSPSSSGSLSMVLLGESDQSGTAVDSNRKRAKRPRENSNSKHPLFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGNSAILNFPELADQFPRPASNSPRDVQAAAAKAASMEIPTPPPSSSSSSSSSSLCPSTPEELSEIVQLPSLGTSYETAELGNEFVFVDSVEGWLYSYPWYQRVNNNADEEQSHGFFRDQISTDSITPPSSSFEAFLWQY 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3142161 3142916 + CmoCh10G006890.1 Cmo10g00689 390035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00689 251 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Cmo10g00689 251 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Cmo10g00689 251 MobiDBLite consensus disorder prediction 1 42 - -
Cmo10g00689 251 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 28 250 - -
Cmo10g00689 251 MobiDBLite consensus disorder prediction 151 169 - -
Cmo10g00689 251 MobiDBLite consensus disorder prediction 128 169 - -
Cmo10g00689 251 SUPERFAMILY DNA-binding domain 64 122 IPR016177 GO:0003677
Cmo10g00689 251 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Cmo10g00689 251 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Cmo10g00689 251 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Cmo10g00689 251 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Cmo10g00689 251 MobiDBLite consensus disorder prediction 43 62 - -
Cmo10g00689 251 MobiDBLite consensus disorder prediction 1 64 - -
Cmo10g00689 251 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Cmo10g00689 251 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 28 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00619 Cmo-Chr5:3104970 Cmo10g00689 Cmo-Chr10:3142161 2.63E-60 dispersed
Cmo09g00240 Cmo-Chr9:1083972 Cmo10g00689 Cmo-Chr10:3142161 6.88E-24 dispersed
Cmo09g00617 Cmo-Chr9:3084770 Cmo10g00689 Cmo-Chr10:3142161 2.12E-58 dispersed
Cmo10g00689 Cmo-Chr10:3142161 Cmo12g00206 Cmo-Chr12:1361052 5.13E-65 dispersed
Cmo10g00689 Cmo-Chr10:3142161 Cmo11g00649 Cmo-Chr11:3103445 9.94E-102 wgd
Cmo10g00689 Cmo-Chr10:3142161 Cmo12g01298 Cmo-Chr12:11419240 1.25E-62 wgd
Cmo10g00689 Cmo-Chr10:3142161 Cmo08g00686 Cmo-Chr8:4379264 2.56E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10472 PF00847 AP2 5.00E-13 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00689 K09286 - csv:101219745 303.523