Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo10g00689 | ATGCCCCTGCTTATTGAGAATGACTCTACAACTTTCAGCTTCTCCTCGCCGTCGCCGTCGCCGTCGCCGTCTTCGTCGGGGAGTTTATCCATGGTTCTATTAGGGGAGAGTGATCAGTCAGGGACGGCGGTAGACTCCAATCGGAAACGAGCCAAACGGCCGAGAGAAAACAGCAACAGCAAACACCCACTCTTCCGTGGGGTCCGAATGAGGGCATGGGGGAAATGGGTGTCCGAAATTCGTGAGCCTCGAAAGAAGAGTCGGATCTGGCTTGGCACTTTCTCTACCCCTGAAATGGCCGCACGTGCCCACGACGTTGCCGCTCTCACCATTAAAGGAAACTCCGCCATTCTCAACTTCCCTGAACTCGCCGATCAATTCCCCCGCCCCGCTTCCAACTCCCCTCGCGACGTTCAAGCCGCCGCCGCCAAAGCCGCCTCCATGGAAATCCCAACTCCCCCACCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTATGTCCATCGACGCCGGAGGAACTGAGTGAAATAGTGCAACTCCCGAGTTTAGGAACGAGTTACGAAACGGCCGAGTTAGGAAACGAATTCGTATTCGTCGACTCAGTGGAAGGTTGGCTTTATTCATACCCATGGTATCAAAGAGTGAATAACAATGCAGATGAAGAACAGAGCCATGGCTTCTTCAGAGACCAGATTTCAACAGACTCCATAACTCCTCCATCTTCAAGCTTCGAAGCTTTCTTATGGCAATATTAA | 756 | 53.04 | MPLLIENDSTTFSFSSPSPSPSPSSSGSLSMVLLGESDQSGTAVDSNRKRAKRPRENSNSKHPLFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGNSAILNFPELADQFPRPASNSPRDVQAAAAKAASMEIPTPPPSSSSSSSSSSLCPSTPEELSEIVQLPSLGTSYETAELGNEFVFVDSVEGWLYSYPWYQRVNNNADEEQSHGFFRDQISTDSITPPSSSFEAFLWQY | 251 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3142161 | 3142916 | + | CmoCh10G006890.1 | Cmo10g00689 | 390035 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo10g00689 | 251 | Gene3D | AP2/ERF domain | 64 | 122 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo10g00689 | 251 | SMART | rav1_2 | 64 | 127 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo10g00689 | 251 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Cmo10g00689 | 251 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 28 | 250 | - | - | |
Cmo10g00689 | 251 | MobiDBLite | consensus disorder prediction | 151 | 169 | - | - | |
Cmo10g00689 | 251 | MobiDBLite | consensus disorder prediction | 128 | 169 | - | - | |
Cmo10g00689 | 251 | SUPERFAMILY | DNA-binding domain | 64 | 122 | IPR016177 | GO:0003677 | |
Cmo10g00689 | 251 | CDD | AP2 | 63 | 123 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo10g00689 | 251 | PRINTS | Ethylene responsive element binding protein signature | 87 | 103 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo10g00689 | 251 | PRINTS | Ethylene responsive element binding protein signature | 65 | 76 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo10g00689 | 251 | Pfam | AP2 domain | 63 | 113 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo10g00689 | 251 | MobiDBLite | consensus disorder prediction | 43 | 62 | - | - | |
Cmo10g00689 | 251 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
Cmo10g00689 | 251 | ProSiteProfiles | AP2/ERF domain profile. | 64 | 121 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo10g00689 | 251 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE | 28 | 250 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00619 | Cmo-Chr5:3104970 | Cmo10g00689 | Cmo-Chr10:3142161 | 2.63E-60 | dispersed | |
Cmo09g00240 | Cmo-Chr9:1083972 | Cmo10g00689 | Cmo-Chr10:3142161 | 6.88E-24 | dispersed | |
Cmo09g00617 | Cmo-Chr9:3084770 | Cmo10g00689 | Cmo-Chr10:3142161 | 2.12E-58 | dispersed | |
Cmo10g00689 | Cmo-Chr10:3142161 | Cmo12g00206 | Cmo-Chr12:1361052 | 5.13E-65 | dispersed | |
Cmo10g00689 | Cmo-Chr10:3142161 | Cmo11g00649 | Cmo-Chr11:3103445 | 9.94E-102 | wgd | |
Cmo10g00689 | Cmo-Chr10:3142161 | Cmo12g01298 | Cmo-Chr12:11419240 | 1.25E-62 | wgd | |
Cmo10g00689 | Cmo-Chr10:3142161 | Cmo08g00686 | Cmo-Chr8:4379264 | 2.56E-48 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10472 | PF00847 | AP2 | 5.00E-13 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo10g00689 | K09286 | - | csv:101219745 | 303.523 |