Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00700 ATGAGCATTTCCGCCATAGCCAAAGACCTTCCAAAGACCTTTCATCATCTTCTCCACATGACAACATCTTTTTCTTCTCTGGAAACCATTTCCTTCTTCCTCCTCCTCCTCCTCTGTTCCCACCATGTCAATTCCCACCTCTACGAACAAGAACACTCTGTTCTTCTCCGACTCAACCACTTCTGGCAGAACCAACCGCCGCTTCACCATTGGCCGTCCTCCAATGCTTCTCATTGTACATGGCCGGAGGTTCAGTGTACTGACAATTCCGTCACTGCCCTTCTTTTCCATTCCTATAATTTGAACGGAACTTTCCCCCCTTTCATTTGCGACCTCAAAAATCTCACCTTTATTGATCTTCAGTACAATTTCATCACCGGCGGCTTTCCGACCACGCTTTACAATTGCTCGAACCTTAATTACCTCGACCTCTCGCAGAATTACTTTGTCGGCTCGATACCCAATGACGTCGATCGCTTGTCTCGTCTCCAGTTTCTTAATCTCGGTGCAAACAACTTCTCCGGTGACATTCCGACAGCCATTTCTCGGCTGTCGGAACTCCGGTACCTTCATCTTTTTATGAATCAATTCAATGGGACTTACCCATCTGAAATCGGCAACTTATCGAATCTGGAAGAGTTGCTGTTGGCTTATAATTCAAATTTGCTACCGGCTGAATTGCCTTCCAGTTTCGCCCAATTGAAGAAATTGACGTTTTTGTGGATGGCAGAATCAAACGTGAACGGTGAAATTCCAGAATGGATCGGAAACTTGACCGCCCTCGAGCGATTGGATTTGTCGAAGAATCATTTGATTGGGGAAATTCCTAGCAGTTTGTTTAGATTGAAGAATCTCAGCATCGTTTATCTCTACAAGAACAATCTATCAGGTGAAATTCCTCAGCGGATTGATTCTAAGAAAATCATCGAATACGACCTATCGGAAAATAATCTGACCGGAAGAATTCCGGCGGCCATCGGTGATCTTCAAGAACTGACGGCTCTGCTTCTGTGTTCAAATCAGTTAAGTGGAGAAATCCCAGAAAGCATCGGTCGTCTTCCATTATTAACAGATGTCAGATTATTCAGCAACAATTTAAACGGTACATTACCGCCAGATTTCGGGCGAAATTTGATCCTCGAAAGTTTTCAGGTGAGTTCAAATAAGCTCACCGGAAGCTTGCCGGAACACCTCTGCTCCGGCGGTAAGCTCAAAGGAGTGATTGCTTACGACAATAATCTTAGTGGGGAATTACCAGAATCTCTTGGGAGTTGCGATAGCTTGTTCATTATTGATGTTCATAAGAACAACTTCTCCGGGAAAATTCCGGTCGGTTTATGGACGTCTCTGAATTTAACATTTGTAATGATGAACGACAATTCTTTCATGGATGAACTCCCTCGGAGAATCTCCAAGAATCTCGCGAGATTAGAAATCAGTAACAACAAATTTTCAGGGAAAATCCCATCGGAGTTATCTTCATTTTGGAATTTGACTGAGATTGAAGCAAGCAATAATCGATTGTCAGGACGAATTCCTGAAGAACTCACTGCCCTTTCAAAGATGAACAAGCTTTCGCTCGATGGAAATCAACTCACAGGGGAGCTTCCACGGAACATCATTTCATGGAGATCATTGCACAGCCTTAAACTCAGTCGAAATCGACTCTCTGGTAAAATTCCAGACGAATTTTGCAATTTACCAAGCCTTAATGATCTTGATCTCTCAGAGAATCGACTTTCCGGAACAATTCCGATCGAACTGGGAAATTTGAACTTGAATTTCCTCAACCTCTCTTCAAATTTTCTGTCTGGGAAAATCCCGCCTGCATTTGGAAATGAAATCTATGCAAGAAGCTTTTTGAACAATCCGGGTCTTTGTTTAAATCTGGACGGCTGCAGTTTAAGAACTCAGAATTTGCGAAAGATTTCATCGCAGCATCTTGCTCTGATCGTATGTTTGGGCGTAATAATATCCATATTCTTTGTAGTTTCTGCTCTGTACATAATCAAAATCTATACAAAAACTGGAATCAAAGCAGATGTTGAATGGAAATTGACATCATTTCAGAGGCTGAATTTCTCGGAGGGTAATCTTTTATCTGGGCTGTCGGAGAACAACGTGATCGGCAGCGGTGGATCCGGGAAAGTTTACCGGATTCCAGTGAATAATCTGGGTGATATGGTGGCCGTGAAGAGAATATGGAACAGCAGAAAGTCAGACCACAAGCTTGAGAAAGAATTCATGGCGGAAGTTGAGATTCTCAGTTCGATTCGACATAACAATATAATCAAACTCCTCTGCTGCGTTTCCTGTGAAAGTTCACGACTGCTCGTTTACGAGTACATGGAGAAGCAAAGCCTGGACAAATGGCTACACAATAAGAACTCACTGCCAAGAATTGCAGGGTCGGGCGCTGTTCGCGGTGTCGCCCTCAATTGGCCGATGAGATTTCAAATTGCAGTGGGGGTAGCACAGGGCCTCTGTTATATGCACCATGAATGCTCCCCGTCGGTAATTCACAGAGACTTGAAGTCCAGCAATATCTTACTAGATTCAGAATTCAATGCCAAAATAGCAGACTTTGGCTTAGCCAAGTTGCTGGTGAAGCAAGGGGAACCAGCTTCAATCTCCGCTGTCGCGGGCTCCTTCGGATACATGGCTCCAGAGTATGCCCAGATACCGAGAATTAACGAGAAGATCGATGTGTTTAGCTTTGGAGTTATACTTCTAGAGTTGGTGACCGGAAAGGAAGCTCTTACCGGCGTTGAAGACTCGTCTCTGGCTATGTGGGCTTGGGAGTTCATTAAACAAGGCAAGGCAATAGTCGAAGCATTGGATGAGGATGTGAAGGAGACACGTTATCTTGATGAAATGTGCAGTGTGTTCAAACTAGGACTGATCTGCACTTCCAGTGCGCCAACCAGCCGGCCGAGCATGAACCAGGCTCTGCAAATCTTGTACAGACTCGCTGAGAGATATGACGATTACTTGAAAGATGTAACCGTCAAGGTTCTCTTCAGTGGTGGAGACTGGAGAGGACCCGGCACTCGAGCCACTGCTCCGAGCACAAATGGCAATGGAGTTGACGGGTCGACACGGAACTCGGGGAAGGATGATTTCATCGGAGACGATGGCGAGGAGGGAAACCCCTCGTCCCCATTTATTAACCATATCAAAGCCAAAGGACTCCTCTACCCCAAGATACTGCGAGTGAGATGCTGCGAGAAGTGCTGCTCCAATGCCAGAGCCATCGTTCGAGTGCTCGATCACAAAGTTATCTGCAACTTCGTCTCCCAGTAA 3303 44.99 MSISAIAKDLPKTFHHLLHMTTSFSSLETISFFLLLLLCSHHVNSHLYEQEHSVLLRLNHFWQNQPPLHHWPSSNASHCTWPEVQCTDNSVTALLFHSYNLNGTFPPFICDLKNLTFIDLQYNFITGGFPTTLYNCSNLNYLDLSQNYFVGSIPNDVDRLSRLQFLNLGANNFSGDIPTAISRLSELRYLHLFMNQFNGTYPSEIGNLSNLEELLLAYNSNLLPAELPSSFAQLKKLTFLWMAESNVNGEIPEWIGNLTALERLDLSKNHLIGEIPSSLFRLKNLSIVYLYKNNLSGEIPQRIDSKKIIEYDLSENNLTGRIPAAIGDLQELTALLLCSNQLSGEIPESIGRLPLLTDVRLFSNNLNGTLPPDFGRNLILESFQVSSNKLTGSLPEHLCSGGKLKGVIAYDNNLSGELPESLGSCDSLFIIDVHKNNFSGKIPVGLWTSLNLTFVMMNDNSFMDELPRRISKNLARLEISNNKFSGKIPSELSSFWNLTEIEASNNRLSGRIPEELTALSKMNKLSLDGNQLTGELPRNIISWRSLHSLKLSRNRLSGKIPDEFCNLPSLNDLDLSENRLSGTIPIELGNLNLNFLNLSSNFLSGKIPPAFGNEIYARSFLNNPGLCLNLDGCSLRTQNLRKISSQHLALIVCLGVIISIFFVVSALYIIKIYTKTGIKADVEWKLTSFQRLNFSEGNLLSGLSENNVIGSGGSGKVYRIPVNNLGDMVAVKRIWNSRKSDHKLEKEFMAEVEILSSIRHNNIIKLLCCVSCESSRLLVYEYMEKQSLDKWLHNKNSLPRIAGSGAVRGVALNWPMRFQIAVGVAQGLCYMHHECSPSVIHRDLKSSNILLDSEFNAKIADFGLAKLLVKQGEPASISAVAGSFGYMAPEYAQIPRINEKIDVFSFGVILLELVTGKEALTGVEDSSLAMWAWEFIKQGKAIVEALDEDVKETRYLDEMCSVFKLGLICTSSAPTSRPSMNQALQILYRLAERYDDYLKDVTVKVLFSGGDWRGPGTRATAPSTNGNGVDGSTRNSGKDDFIGDDGEEGNPSSPFINHIKAKGLLYPKILRVRCCEKCCSNARAIVRVLDHKVICNFVSQ 1100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3208478 3212526 + CmoCh10G007000.1 Cmo10g00700 390046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00700 1100 Gene3D Ribonuclease Inhibitor 200 305 IPR032675 -
Cmo10g00700 1100 SUPERFAMILY L domain-like 59 303 - -
Cmo10g00700 1100 SMART LRR_typ_2 519 543 IPR003591 -
Cmo10g00700 1100 SMART LRR_typ_2 567 591 IPR003591 -
Cmo10g00700 1100 SMART LRR_typ_2 258 282 IPR003591 -
Cmo10g00700 1100 SMART LRR_typ_2 329 353 IPR003591 -
Cmo10g00700 1100 SMART LRR_typ_2 160 184 IPR003591 -
Cmo10g00700 1100 Gene3D Phosphorylase Kinase; domain 1 686 782 - -
Cmo10g00700 1100 Pfam Leucine rich repeat 114 173 IPR001611 GO:0005515
Cmo10g00700 1100 ProSitePatterns Protein kinases ATP-binding region signature. 709 732 IPR017441 GO:0005524
Cmo10g00700 1100 Pfam Protein kinase domain 705 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00700 1100 SUPERFAMILY RNI-like 312 652 - -
Cmo10g00700 1100 MobiDBLite consensus disorder prediction 1018 1034 - -
Cmo10g00700 1100 Gene3D Ribonuclease Inhibitor 473 648 IPR032675 -
Cmo10g00700 1100 Gene3D Ribonuclease Inhibitor 306 472 IPR032675 -
Cmo10g00700 1100 ProSiteProfiles Protein kinase domain profile. 703 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00700 1100 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 31 994 - -
Cmo10g00700 1100 Gene3D Transferase(Phosphotransferase) domain 1 783 1005 - -
Cmo10g00700 1100 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 31 994 - -
Cmo10g00700 1100 MobiDBLite consensus disorder prediction 1016 1053 - -
Cmo10g00700 1100 ProSitePatterns Serine/Threonine protein kinases active-site signature. 839 851 IPR008271 GO:0004672|GO:0006468
Cmo10g00700 1100 SUPERFAMILY Protein kinase-like (PK-like) 698 988 IPR011009 -
Cmo10g00700 1100 SMART serkin_6 703 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00700 1100 Gene3D Ribonuclease Inhibitor 48 199 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00700 Cmo11g00660 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00700 Cmo-Chr10:3208478 Cmo11g01873 Cmo-Chr11:13048466 0 dispersed
Cmo12g00191 Cmo-Chr12:1254606 Cmo10g00700 Cmo-Chr10:3208478 0 transposed
Cmo10g00700 Cmo-Chr10:3208478 Cmo11g00660 Cmo-Chr11:3178027 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74620 PF00069 Pkinase 1.10E-49 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00700 - - csv:101214935 1531.92