Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00702 ATGGGGAGGGCGACAAGATGGTTCAAGAACTTCTTTGGGATTAAGAGAGACAAAGAAAATTCCAACCAAACAAAACCCACTTCCAATTCCGCCGCCGACAACGATCTCTGCAATAATCCCGCCACAGTACCGCCGTATTTATCAGCGGCAGAGGCGGCGTGGTTGAAATCCTTCTACTCTGAAACAGATAAGGAACAGAGTAAGCATGCAATAGCAGTGGCTGCAGCCACTGCCGCAGCAGCCGACGCGGCGGTTGCTGCAGCACAAGCTGCGGTGGCTGTAGTCCGCTTGACTAGCCATGGTAGAGGTACTATGTTTGGCGGCGGCCGGGAAAGATGGGCCTCTGTAAAGATTCAAACTTGCTTCAGAGGGTATCTGGCGAGGAAAGCACTGAGAGCACTGAAAGGTCTGGTGAAATTACAGGCGGTTGTTAGGGGATATTTTGTTCGTAAACAAGCAACAGCTACTCTTCTCAGTATGCAAGCTTTAATTAGAGCTCAAGCCACCGTTCGGTCTCAGAGAACTCGCAGACTTGAAACCCGAGCCCGCAAGAACACGGAGAGATTTGACGATACGAAGAGCGAACACACTGCTTCAGTTCATAGCCGACGGCTCTCTGCTTCATTAGACAACATGATATTTACAGCGCTGGAAGAAAGCCCCAAAATCGTGGAAATGGACACTAGCCGACCCAAATCCATGTCTCGTCGGACGAACACGTCGTTGTCGGAATTGGGTGACGACCCATTTAACCAACCATTGTCGTCTCCACTTCCTTGTCGGACTCCGTCACGTTTGCAGATCCCAGATGGTCGGAATTTGCACGATTCCGACTGGGGTTTTGTGGCTGAGGAATGCCGTTTAATCTCGACGGCGCAGAGTACTCCACGATTTGTCAGCTGTGGTGGTTCCAATGGTGGTCCTCCGACGCCGGCGAAGAGTATGTGCGGCGATAATTTCTTCAGAGGGTACTTGAATTTCCCAAATTACATGGCGAATACTCAATCGTTTAAAGCGAAATTGAGGTCTCAAAGTGCTCCAAAACAGAGGCCAGAGCCGGGATCGAAGAAAAGAGTCTCGTTGAACGACTTAATGGAATCAAGAAGCAGCCTTAGTGGGGTTCGAATGCAGAGATCATGCTCCCAAGTTCAAGACGCCATTAATTTCAAGAACGCAGTGATGAGCAAACTCGACCGGCCATCGGAATTCAACAACTTGCAGAGAAAAACATGA 1233 49.72 MGRATRWFKNFFGIKRDKENSNQTKPTSNSAADNDLCNNPATVPPYLSAAEAAWLKSFYSETDKEQSKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWASVKIQTCFRGYLARKALRALKGLVKLQAVVRGYFVRKQATATLLSMQALIRAQATVRSQRTRRLETRARKNTERFDDTKSEHTASVHSRRLSASLDNMIFTALEESPKIVEMDTSRPKSMSRRTNTSLSELGDDPFNQPLSSPLPCRTPSRLQIPDGRNLHDSDWGFVAEECRLISTAQSTPRFVSCGGSNGGPPTPAKSMCGDNFFRGYLNFPNYMANTQSFKAKLRSQSAPKQRPEPGSKKRVSLNDLMESRSSLSGVRMQRSCSQVQDAINFKNAVMSKLDRPSEFNNLQRKT 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3221407 3223207 + CmoCh10G007020.1 Cmo10g00702 390048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00702 410 ProSiteProfiles IQ motif profile. 135 162 IPR000048 GO:0005515
Cmo10g00702 410 Pfam IQ calmodulin-binding motif 138 152 IPR000048 GO:0005515
Cmo10g00702 410 Pfam IQ calmodulin-binding motif 112 132 IPR000048 GO:0005515
Cmo10g00702 410 MobiDBLite consensus disorder prediction 233 259 - -
Cmo10g00702 410 PANTHER - 1 401 - -
Cmo10g00702 410 Gene3D - 108 156 - -
Cmo10g00702 410 PANTHER IQ-DOMAIN 5-RELATED 1 401 - -
Cmo10g00702 410 MobiDBLite consensus disorder prediction 225 259 - -
Cmo10g00702 410 SMART iq_5 110 132 IPR000048 GO:0005515
Cmo10g00702 410 SMART iq_5 133 154 IPR000048 GO:0005515
Cmo10g00702 410 ProSiteProfiles IQ motif profile. 111 139 IPR000048 GO:0005515
Cmo10g00702 410 MobiDBLite consensus disorder prediction 181 200 - -
Cmo10g00702 410 Pfam Protein of unknown function (DUF4005) 296 373 IPR025064 -
Cmo10g00702 410 MobiDBLite consensus disorder prediction 181 201 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00702 Cmo11g00664 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01517 Cmo-Chr2:8836084 Cmo10g00702 Cmo-Chr10:3221407 5.38E-27 dispersed
Cmo08g01104 Cmo-Chr8:7071898 Cmo10g00702 Cmo-Chr10:3221407 6.86E-28 dispersed
Cmo10g00702 Cmo-Chr10:3221407 Cmo14g01779 Cmo-Chr14:13719051 1.24E-35 dispersed
Cmo01g00094 Cmo-Chr1:424535 Cmo10g00702 Cmo-Chr10:3221407 2.24E-69 wgd
Cmo10g00702 Cmo-Chr10:3221407 Cmo11g00664 Cmo-Chr11:3196822 0 wgd
Cmo10g00702 Cmo-Chr10:3221407 Cmo14g01322 Cmo-Chr14:11042130 1.28E-82 wgd
Cmo10g00702 Cmo-Chr10:3221407 Cmo17g00728 Cmo-Chr17:7275951 3.04E-102 wgd
Cmo10g00702 Cmo-Chr10:3221407 Cmo08g00706 Cmo-Chr8:4464506 7.23E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00702 - - csv:101215651 617.076