Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00702 ATGGGGAGGGCGACAAGATGGTTCAAGAACTTCTTTGGGATTAAGAGAGACAAAGAAAATTCCAACCAAACAAAACCCACTTCCAATTCCGCCGCCGACAACGATCTCTGCAATAATCCCGCCACAGTACCGCCGTATTTATCAGCGGCAGAGGCGGCGTGGTTGAAATCCTTCTACTCTGAAACAGATAAGGAACAGAGTAAGCATGCAATAGCAGTGGCTGCAGCCACTGCCGCAGCAGCCGACGCGGCGGTTGCTGCAGCACAAGCTGCGGTGGCTGTAGTCCGCTTGACTAGCCATGGTAGAGGTACTATGTTTGGCGGCGGCCGGGAAAGATGGGCCTCTGTAAAGATTCAAACTTGCTTCAGAGGGTATCTGGCGAGGAAAGCACTGAGAGCACTGAAAGGTCTGGTGAAATTACAGGCGGTTGTTAGGGGATATTTTGTTCGTAAACAAGCAACAGCTACTCTTCTCAGTATGCAAGCTTTAATTAGAGCTCAAGCCACCGTTCGGTCTCAGAGAACTCGCAGACTTGAAACCCGAGCCCGCAAGAACACGGAGAGATTTGACGATACGAAGAGCGAACACACTGCTTCAGTTCATAGCCGACGGCTCTCTGCTTCATTAGACAACATGATATTTACAGCGCTGGAAGAAAGCCCCAAAATCGTGGAAATGGACACTAGCCGACCCAAATCCATGTCTCGTCGGACGAACACGTCGTTGTCGGAATTGGGTGACGACCCATTTAACCAACCATTGTCGTCTCCACTTCCTTGTCGGACTCCGTCACGTTTGCAGATCCCAGATGGTCGGAATTTGCACGATTCCGACTGGGGTTTTGTGGCTGAGGAATGCCGTTTAATCTCGACGGCGCAGAGTACTCCACGATTTGTCAGCTGTGGTGGTTCCAATGGTGGTCCTCCGACGCCGGCGAAGAGTATGTGCGGCGATAATTTCTTCAGAGGGTACTTGAATTTCCCAAATTACATGGCGAATACTCAATCGTTTAAAGCGAAATTGAGGTCTCAAAGTGCTCCAAAACAGAGGCCAGAGCCGGGATCGAAGAAAAGAGTCTCGTTGAACGACTTAATGGAATCAAGAAGCAGCCTTAGTGGGGTTCGAATGCAGAGATCATGCTCCCAAGTTCAAGACGCCATTAATTTCAAGAACGCAGTGATGAGCAAACTCGACCGGCCATCGGAATTCAACAACTTGCAGAGAAAAACATGA 1233 49.72 MGRATRWFKNFFGIKRDKENSNQTKPTSNSAADNDLCNNPATVPPYLSAAEAAWLKSFYSETDKEQSKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWASVKIQTCFRGYLARKALRALKGLVKLQAVVRGYFVRKQATATLLSMQALIRAQATVRSQRTRRLETRARKNTERFDDTKSEHTASVHSRRLSASLDNMIFTALEESPKIVEMDTSRPKSMSRRTNTSLSELGDDPFNQPLSSPLPCRTPSRLQIPDGRNLHDSDWGFVAEECRLISTAQSTPRFVSCGGSNGGPPTPAKSMCGDNFFRGYLNFPNYMANTQSFKAKLRSQSAPKQRPEPGSKKRVSLNDLMESRSSLSGVRMQRSCSQVQDAINFKNAVMSKLDRPSEFNNLQRKT 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3221407 3223207 + CmoCh10G007020.1 Cmo10g00702 390048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00702 410 ProSiteProfiles IQ motif profile. 135 162 IPR000048 GO:0005515
Cmo10g00702 410 Pfam IQ calmodulin-binding motif 138 152 IPR000048 GO:0005515
Cmo10g00702 410 Pfam IQ calmodulin-binding motif 112 132 IPR000048 GO:0005515
Cmo10g00702 410 MobiDBLite consensus disorder prediction 233 259 - -
Cmo10g00702 410 PANTHER - 1 401 - -
Cmo10g00702 410 Gene3D - 108 156 - -
Cmo10g00702 410 PANTHER IQ-DOMAIN 5-RELATED 1 401 - -
Cmo10g00702 410 MobiDBLite consensus disorder prediction 225 259 - -
Cmo10g00702 410 SMART iq_5 110 132 IPR000048 GO:0005515
Cmo10g00702 410 SMART iq_5 133 154 IPR000048 GO:0005515
Cmo10g00702 410 ProSiteProfiles IQ motif profile. 111 139 IPR000048 GO:0005515
Cmo10g00702 410 MobiDBLite consensus disorder prediction 181 200 - -
Cmo10g00702 410 Pfam Protein of unknown function (DUF4005) 296 373 IPR025064 -
Cmo10g00702 410 MobiDBLite consensus disorder prediction 181 201 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00702 - - - csv:101215651 617.076
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00702 Cmo11g00664 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01517 Cmo-Chr2:8836084 Cmo10g00702 Cmo-Chr10:3221407 5.38E-27 dispersed
Cmo08g01104 Cmo-Chr8:7071898 Cmo10g00702 Cmo-Chr10:3221407 6.86E-28 dispersed
Cmo10g00702 Cmo-Chr10:3221407 Cmo14g01779 Cmo-Chr14:13719051 1.24E-35 dispersed
Cmo01g00094 Cmo-Chr1:424535 Cmo10g00702 Cmo-Chr10:3221407 2.24E-69 wgd
Cmo10g00702 Cmo-Chr10:3221407 Cmo11g00664 Cmo-Chr11:3196822 0 wgd
Cmo10g00702 Cmo-Chr10:3221407 Cmo14g01322 Cmo-Chr14:11042130 1.28E-82 wgd
Cmo10g00702 Cmo-Chr10:3221407 Cmo17g00728 Cmo-Chr17:7275951 3.04E-102 wgd
Cmo10g00702 Cmo-Chr10:3221407 Cmo08g00706 Cmo-Chr8:4464506 7.23E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g260 . . . . Bpe01g00561 . . Bma11g00541 Cmo10g00702 Cmo11g00664 . . . . Sed08g0818 Cpe04g01092 Cpe18g00396 Bhi02g01952 Tan09g1205 Cmetu04g0490 . Hepe09g0820 . . . . . . . . . . Cone16ag0724 . Cone7ag0718 Lsi06g00223 . . Cme02g00188 Blo08g00322 Blo14g00521 . . Bpe08g00502 . . . . . . Cma10g00673 Cma11g00652 Car10g00607 Car11g00535 . . . . . . . . . Cla03g01545 Cam03g1624 Cec03g1666 Cco03g1666 Clacu03g1648 Cmu03g2201 Cre03g1876 . Csa01g02871 Chy02g01166 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo04g01429 CCT,ECH 99 267 IQD Protein Family AT3G09710 54.7 1.4e-46 184.9
Cmo18g00887 . 102 270 IQD Protein Family AT3G09710 51.4 3.3e-40 163.7
Cmo06g00353 CCT,ECH 1 266 IQD Protein Family AT5G03040 50.9 5.1e-62 236.1
Cmo04g02721 CCT,CST,ECH 1 478 IQD Protein Family AT3G52290 54.1 4.1e-98 355.9
Cmo15g00445 CCT,CST,ECH 1 452 IQD Protein Family AT3G52290 50.4 1.7e-88 323.9
Cmo11g00931 CST 1 412 IQD Protein Family AT3G22190 57.2 4.2e-95 345.9
Cmo10g00895 CST 23 388 IQD Protein Family AT3G22190 57.9 8.4e-88 321.6
Cmo01g01783 . 1 434 IQD Protein Family AT2G26180 59.7 6.1e-115 411.8
Cmo09g00343 . 238 629 IQD Protein Family AT2G26180 58.9 2.3e-98 356.7
Cmo07g00202 . 1 279 IQD Protein Family AT2G33990 51.6 6.3e-65 245.0
Cmo16g00447 . 109 292 IQD Protein Family AT2G33990 53.5 8.2e-49 191.4
Cmo07g00202 . 1 253 IQD Protein Family AT3G15050 51.4 7.8e-60 228.0
Cmo16g00447 . 65 285 IQD Protein Family AT3G15050 52.4 1.1e-53 207.6
Cmo15g00857 . 123 458 IQD Protein Family AT5G13460 52.4 1.3e-75 281.2
Cmo06g00970 . 1 500 IQD Protein Family AT4G00820 56.1 1.2e-126 451.1
Cmo06g00970 . 1 500 IQD Protein Family AT1G01110 52.3 1.6e-123 440.7
Cmo08g00706 CCT,CST,ECH 1 397 IQD Protein Family AT3G16490 52.3 3.2e-73 273.1
Cmo11g00664 CST 1 382 IQD Protein Family AT3G16490 51.6 8.9e-68 255.0
Cmo10g00702 CST 1 376 IQD Protein Family AT3G16490 51.5 7.8e-64 241.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006708 0 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00702 Cmo_Chr10 FPKM 0.835575 1.12161 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0