Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00717 ATGATTATCGGCGAACGCCACCGCCCTGGTCCGGTGGTTCACATCACTCCTTTGACGATACCGGAGGAGCCTGCAAGCGAGACGCGGTTTCCTTATCCTCTGAGCGGAATCTCGGTGAGTTCCGATGGAAATGGCAATGGTGGCGATTACTCTTCCTATTATCTGAAGGAAGCTCTAGCGGCTCTCCAGCGATATGCGAACGAGTCGGAGATTGAATCGGATTCGGAATTATCCGGGCGGGAATCGGACGTTCCGGTGGATGCGTACTCGTGCGATAATTTCCGGATTTTTGAGTTTAAGGTGAGGAAGTGCACGCGAGGACGGTCTCATGATTGGACGGAGTGTCCGTTCGCACATCCAGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAAGTATCATTACTCTGGTACGGCTTGTCCCGACTTTCGTAAAGGTAGCTGTAAAAAAGGGGATTCGTGTGAGTTTGCTCATGGTGTATTCGAGTGTTGGCTCCATCCTGCTCGTTACAGGACTCAGCCGTGCAAGGACGAGACGAACTGTCGACGGAGGGTCTGTTTCTTCGCCCACACTCCTGAGCAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAAGCGCGTACTCCCCAGAGCCGTACGATGAATCTCCTGTACGGCAGTGTTTGGATGGATCCTGTGCCAAATCGCTGCCGTTTCTGTCTTCTCCGGTGTCTGTATCACCGTCGGCGACTCCAGTAGACTCCCCACCGTTATCTCCCATGACTCGATCGCTCGGCCGATCTCTTGGCTCGAGCTCCATTAATGAAATGGTCGCATCTCTCCGTAACTTGCATCTGAGCAAGGTCAAGTCACTGCCATCTTCCTGGAATGTTCAGATTGGATCCCCTGGTTATCCGTCTCGAATCTGCCATGGATTCTGTAGCCTTCCAACAACACCAACTCGGGCTCCAACTGCTCCTGGAGTTGGGCTGCTCGACTTCTCGGACCACGGATTGCAGGAGGAACCAGCTATGGAGCGAGTGGAATCAGGAAGGGAGCTGAGGGCGAAGATGCTGGAGAAGCTGAGCAAGGAAAATTCTCTGGACCTGGTGGATTCAAGCTCTTCAGCTTGCACACCAGACGTTGGATGGGTATCAGAGCTACTGAAGTATGGTAACTGGATGATCCGTTGGATCATGGCCTCTCTGATCATTGTGATTATATTAATCGGATGGAGCGAAGGAATAAAAACTTTCCCGCCTTGCGGAACGGCTTTGCCCTTCCCGCATTTCTCTGGAGCCTTCTCCCACACTCTTAAGCTTAGAGGATCCATGTCTAAGAAAAGAGGCCTTTCTCTGGAAGAGAAGCGCGAGAAGATGCTTCAGATCTTTTACGATTCTCAAGACTTTTTCCTTCTTAAGGAGCTTGAAAAATTGGGTCCCAGGAAAGGTGTGATTTCTCAGTCAGTGAAAGACGTTGTGCAAAGTTTAGTGGACGATGACCTGGTTTCAAAAGAGAAGATTGGAACTTCAGTCTATTTTTGGAGTTTACCAAGCTGTGCTGGTAATCAGCTGCGGAATGTGTATCGTAAACTTGAATCTGATCTCCAAACCAGTAAGAATAGACTGGAAGAACTTACTGAGCAGAGTAATGCATTAAAGAAGGGAAGAGAGGAATCTGAAGAACGAGAGGAAGCCCTAGCTCAATTAAAAGCCATTGAACTGAAGCATAAAGAGCTAAAGGATGAGATGGTACAATATGCAGATAATGATCCAGCAGCCTTTGAAGCAATGAAAAATGCAATTGAAGATGCTCATGCTGCAGCCAACCGATGGACAGACAACATTTTCACTTTGCGACAATGGTGTTCAAACAACTTTCCACAGGCGAAAGAACAACTAGAGAACCTGTATAAAGAGGTTGGCATCACGGATGATTTTGATTATTTGGAGTTGTCACCAGCTCCTCTGAGCTCAGTTGTCGATTAA 1962 49.08 MIIGERHRPGPVVHITPLTIPEEPASETRFPYPLSGISVSSDGNGNGGDYSSYYLKEALAALQRYANESEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDETNCRRRVCFFAHTPEQLRVLPQQSPRSAYSPEPYDESPVRQCLDGSCAKSLPFLSSPVSVSPSATPVDSPPLSPMTRSLGRSLGSSSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRICHGFCSLPTTPTRAPTAPGVGLLDFSDHGLQEEPAMERVESGRELRAKMLEKLSKENSLDLVDSSSSACTPDVGWVSELLKYGNWMIRWIMASLIIVIILIGWSEGIKTFPPCGTALPFPHFSGAFSHTLKLRGSMSKKRGLSLEEKREKMLQIFYDSQDFFLLKELEKLGPRKGVISQSVKDVVQSLVDDDLVSKEKIGTSVYFWSLPSCAGNQLRNVYRKLESDLQTSKNRLEELTEQSNALKKGREESEEREEALAQLKAIELKHKELKDEMVQYADNDPAAFEAMKNAIEDAHAAANRWTDNIFTLRQWCSNNFPQAKEQLENLYKEVGITDDFDYLELSPAPLSSVVD 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3287572 3292766 - CmoCh10G007170.1 Cmo10g00717 390063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00717 653 MobiDBLite consensus disorder prediction 235 256 - -
Cmo10g00717 653 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 158 IPR000571 GO:0046872
Cmo10g00717 653 ProSiteProfiles Zinc finger C3H1-type profile. 134 160 IPR000571 GO:0046872
Cmo10g00717 653 Coils Coil 520 581 - -
Cmo10g00717 653 Pfam Mnd1 HTH domain 451 509 IPR040453 -
Cmo10g00717 653 Gene3D - 131 197 - -
Cmo10g00717 653 PANTHER UNKEMPT FAMILY MEMBER 9 380 IPR045234 -
Cmo10g00717 653 SMART c3hfinal6 133 159 IPR000571 GO:0046872
Cmo10g00717 653 SMART c3hfinal6 168 191 IPR000571 GO:0046872
Cmo10g00717 653 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 9 380 - -
Cmo10g00717 653 Pfam Leucine zipper with capping helix domain 585 641 IPR040661 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00717 Cmo12g01319 CCT
Cmo10g00717 Cmo12g01319 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01815 Cmo-Chr1:13306877 Cmo10g00717 Cmo-Chr10:3287572 2.72E-98 dispersed
Cmo05g00118 Cmo-Chr5:495566 Cmo10g00717 Cmo-Chr10:3287572 2.47E-74 dispersed
Cmo10g00717 Cmo-Chr10:3287572 Cmo11g00683 Cmo-Chr11:3277711 0 dispersed
Cmo11g01994 Cmo-Chr11:13660997 Cmo10g00717 Cmo-Chr10:3287572 7.59E-62 dispersed
Cmo20g00367 Cmo-Chr20:1811451 Cmo10g00717 Cmo-Chr10:3287572 2.95E-54 dispersed
Cmo11g00681 Cmo-Chr11:3270902 Cmo10g00717 Cmo-Chr10:3287572 1.75E-49 transposed
Cmo10g00717 Cmo-Chr10:3287572 Cmo11g00680 Cmo-Chr11:3269322 3.12E-59 wgd
Cmo10g00717 Cmo-Chr10:3287572 Cmo12g01319 Cmo-Chr12:11538984 1.10E-152 wgd
Cmo10g00717 Cmo-Chr10:3287572 Cmo12g00560 Cmo-Chr12:3468989 1.49E-78 wgd
Cmo10g00717 Cmo-Chr10:3287572 Cmo09g00324 Cmo-Chr9:1409001 7.38E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10474 PF03962 Mnd1 2.30E-24 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00717 - - csv:101204432 667.922