Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00767 ATGAGGAAGGGAGGCTTCAGCAACAACCTCAACCTCAAGCTCAATCTCCCTCAAGATGACCAATCCATAGCGAAGTTCCTAACGCAGAGCGGCACGTTTAAGGATGGCGATCTGCTCGTAAACAGAGATGGGGTTCGGATTGTTTCCAAGAGTGAAGTTGAAGCACCACCTCCGATTAAGCCTACCGATGATCAGCTGAGTTTAGCGGACATAGACATAATTAAAGTCATTGGAAAAGGAAATGGTGGAACCGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATTGAGGAGTCTCACCGCAAGCAGATTGCACAAGAATTGAAAATCAATCAATCAGCGCAGTGCCCTTATATAGTTGTCTGTTACCAATCTTTCTATGATAATGGCTCTATATATATCATCCTAGAGTACATGGATGGAGGTTCTTTAGCAGATTTCTTGAAAAAGGTTAAACAAGTTCAAGAACCATATCTTGCTGCCCTTTGTAAGCAGGTGCTGAAGGGGTTGTCATACCTTCACCATGAACGACACATCATTCATCGGGACTTAAAGCCTTCTAATTTATTAATAAATCATAGAGGGGAAGTCAAGATTACTGACTTTGGTGTCAGTGCGATTATGGCAAGCACATATGGAGAGGCTAATACTTTTGTTGGCACGTATAACTATATGTCTCCAGAGAGAATTATTGGAGAAAAATATGATAATAAAAGTGACATTTGGAGCTTGGGCCTGATATTTCTCGAGTGTGCAACCGGAAAATTTCCTTATTCCCCACCAGAGCAAGAGGGAGGATGGGTTAATTTTTATGAGCTTATGGAAGCCATTGTTGAGGGCGAACCTCCTTCTGCTCCGGCTGACCAATTTACTCCCAACTTCTGTTCGTTCATTTCTGCATGGAATTTGCATCTTGTGCAAAAGGACCCAAGGGATAGACTGTCAGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGTATGAAGATACAGATATTGACCTGTCATCTTACTTCAATGATGCAGGGTCTCCACTTGCAACTTTCTAA 1080 41.85 MRKGGFSNNLNLKLNLPQDDQSIAKFLTQSGTFKDGDLLVNRDGVRIVSKSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVKQVQEPYLAALCKQVLKGLSYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSAIMASTYGEANTFVGTYNYMSPERIIGEKYDNKSDIWSLGLIFLECATGKFPYSPPEQEGGWVNFYELMEAIVEGEPPSAPADQFTPNFCSFISAWNLHLVQKDPRDRLSARELLEHPFIKMYEDTDIDLSSYFNDAGSPLATF 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3558589 3561968 - CmoCh10G007670.1 Cmo10g00767 390113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00767 359 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Cmo10g00767 359 PANTHER MAP KINASE KINASE 9 358 - -
Cmo10g00767 359 SMART serkin_6 71 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00767 359 CDD PKc_MAPKK_plant_like 69 339 - -
Cmo10g00767 359 SUPERFAMILY Protein kinase-like (PK-like) 56 341 IPR011009 -
Cmo10g00767 359 Gene3D Phosphorylase Kinase; domain 1 47 150 - -
Cmo10g00767 359 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 9 358 - -
Cmo10g00767 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Cmo10g00767 359 ProSiteProfiles Protein kinase domain profile. 71 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00767 359 Gene3D Transferase(Phosphotransferase) domain 1 151 355 - -
Cmo10g00767 359 Pfam Protein kinase domain 73 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00767 K20603 MKK2; mitogen-activated protein kinase kinase 2 [EC:2.7.12.2] - csv:101204545 677.167
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00767 Cmo11g00726 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00767 Cmo-Chr10:3558589 Cmo13g01011 Cmo-Chr13:8596536 1.43E-64 dispersed
Cmo12g01310 Cmo-Chr12:11475316 Cmo10g00767 Cmo-Chr10:3558589 1.85E-135 transposed
Cmo14g00685 Cmo-Chr14:3500450 Cmo10g00767 Cmo-Chr10:3558589 1.22E-74 transposed
Cmo10g00767 Cmo-Chr10:3558589 Cmo11g00726 Cmo-Chr11:3514026 0 wgd
Cmo10g00767 Cmo-Chr10:3558589 Cmo12g01353 Cmo-Chr12:11669407 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g140 . Blo16g00976 . Bda11g01036 Bpe01g00601 . . Bma11g00589 Cmo10g00767 Cmo11g00726 . . . . Sed08g0891 Cpe04g01040 Cpe18g00340 Bhi02g01848 Tan09g1114 Cmetu09g0930 . . . . Cla11g00151 Cam11g0173 Cec11g0175 Cco11g0187 Clacu11g0310 Cmu11g0162 Cre11g0661 . . . Cone7ag0750 Lsi06g00302 Csa02g00036 Chy05g01452 Cme02g00272 . Blo14g00559 Bda02g00383 . . Bpe13g01246 . . Sed05g1512 . . Cma10g00741 Cma11g00712 Car10g00666 Car11g00592 . . Bhi06g01629 Tan08g0048 Cmetu04g1006 . Hepe08g2677 . . Cla03g01476 Cam03g1552 Cec03g1594 Cco03g1588 Clacu03g1576 Cmu03g2132 Cre03g1805 Lsi11g00177 Csa01g02954 Chy02g01249 Cme05g02055
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo10g00767 CST 28 357 MAP Kinase Kinase Gene Family AT4G26070 69.7 4.1e-133 471.9
Cmo11g00726 CST 28 353 MAP Kinase Kinase Gene Family AT4G26070 68.1 1.9e-130 463.0
Cmo12g01353 . 27 363 MAP Kinase Kinase Gene Family AT4G26070 63.6 1.7e-118 423.3
Cmo05g01376 . 26 349 MAP Kinase Kinase Gene Family AT4G26070 55.0 6.6e-107 384.8
Cmo10g00767 CST 1 330 MAP Kinase Kinase Gene Family AT4G29810 68.1 1.1e-130 463.8
Cmo11g00726 CST 1 326 MAP Kinase Kinase Gene Family AT4G29810 67.5 1.4e-130 463.4
Cmo05g01376 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 58.2 4.1e-109 392.1
Cmo12g01353 . 1 322 MAP Kinase Kinase Gene Family AT4G29810 61.0 2.6e-108 389.4
Cmo12g01310 . 10 348 MAP Kinase Kinase Gene Family AT4G29810 52.1 4.8e-94 342.0
Cmo14g00685 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 80.1 6.9e-230 793.9
Cmo01g00026 . 1 367 MAP Kinase Kinase Gene Family AT1G51660 69.1 3.5e-130 462.2
Cmo13g01011 . 48 317 MAP Kinase Kinase Gene Family AT1G51660 54.8 2.1e-82 303.5
Cmo01g00026 . 1 367 MAP Kinase Kinase Gene Family AT3G21220 69.6 1.1e-130 463.8
Cmo13g01011 . 48 313 MAP Kinase Kinase Gene Family AT3G21220 54.9 1.4e-83 307.4
Cmo05g01376 . 1 349 MAP Kinase Kinase Gene Family AT5G56580 83.7 1.4e-168 589.7
Cmo12g01310 . 1 378 MAP Kinase Kinase Gene Family AT5G56580 70.5 5.2e-147 518.1
Cmo10g00767 CST 7 356 MAP Kinase Kinase Gene Family AT5G56580 58.4 4.7e-116 415.2
Cmo11g00726 CST 7 352 MAP Kinase Kinase Gene Family AT5G56580 57.3 1.4e-115 413.7
Cmo12g01353 . 1 352 MAP Kinase Kinase Gene Family AT5G56580 52.8 9.0e-99 357.8
Cmo13g01011 . 1 311 MAP Kinase Kinase Gene Family AT1G18350 62.8 3.5e-107 385.6
Cmo01g00026 . 75 334 MAP Kinase Kinase Gene Family AT1G18350 52.5 1.6e-75 280.4
Cmo13g01011 . 1 299 MAP Kinase Kinase Gene Family AT3G06230 50.5 2.9e-79 292.7
Cmo13g01011 . 1 311 MAP Kinase Kinase Gene Family AT1G73500 66.3 1.9e-113 406.4
Cmo01g00026 . 75 334 MAP Kinase Kinase Gene Family AT1G73500 52.8 1.3e-77 287.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74624 PF00069 Pkinase 3.40E-68 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00767 Cmo_Chr10 FPKM 41.818047 42.140533 41.31176 38.101482 37.776104 39.914665 36.864391 56.360485 61.664246 57.897007