Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00774 ATGGCCAACTCTGAATTCTTCTGCTCCTCACCTCTCTCCCAACCCGATTCCGTTCCTCAATCGAAATCATTTTCCTTCGTTTCGCCCTCTGACTACTGGAACAAGGCTGCGAACGCTCTCAGCCACACCCATCTTGAGGAGGTTTGTCGTATGCTATCGGAGTTTCAAGATGCTCGAGTTGTTGACATTGAAGGTGCCACCCTTACTGTCGCTCAGGTCACTGCCATTGCTCGTCGTAGCGATGTCAAGGTAAACTTGAATGAAGCTGTGGCTCATGATCGTGTGGCCAAAAGTGCAACATGGGTTGCTGAGAAAATCTCTAGTGGAACTGATATCTATGGAGTTACCACTGGTTTTGGTTCGACTTCCCACCGGCGTACGACCAAAGCCGCCGACCTCCAAACAGAACTCATTAGGTTCCTCAATGCTGGAGTTATTGGAAAGGATAATCTTCCATCTGGATACTCAAAGGCAGCCATGCTTGTTAGAACTAACACATTGATGCAAGGCTACTCGGGTATTCGTTGGGAAATTCTTGAAGCTGTGGTGAAGCTCATGAATGAGAATTTGGTACCTAAATTGCCTTTGAGAGGGACAATCACAGCTTCTGGAGATCTTGTTCCATTGTCTTATATTGCTGGGGTTATCACTGGAAGGCATAATTCCAAGGTTACCACCATTGAAGGGGATGAGATCACTGCCATGGAAGCTCTCAACAGAGCTGGAATTGCAGGCCCATTTGAGCTTCAAGCAAAGGAAGGCTTAGCTCTTGTCAACGGAACCGCTGTCGGGTCGGCCGTGGCCGCCACTGTTTGCTACGACGCCAATATCTTGGCTCTTTTAGCCGTCGTTCTCTCTGCTTTGTTCTGTGAAGCCATGCTCGGGAAGCCAGAATTTGCAGACCCATTGACTCATAAACTCAAGCATCACCCTGGCCAGATTGAGTCCGCCGCAGCCATGGAGTTACTCTTGAACCAAAGCGACTTCATGAAAGAAGCAAAAATCCGCCATGAAAACAACCCATTAACTAAGCCAAAACAAGATCGCTATGCACTTCGAACTTCCCCACAATGGCTTGGACCTCAAATCGAAGTCATTCGAATGGCAACCCATTCGATTGAAAGGGAGATCAACTCTGTGAATGATAATCCATTGATCGATGTCAGCCGGAATCTGGCTCTGCACGGAGGAAACTTTCAAGGGACCCCAATCGGAGTTTCCATGGATAATCTCCGAATCGCCATCGCTGCAATTGGTAAGCTAATGTTCGCCCAATTCTCCGAACTCGTCTGTGATCATTTCAACAATGGATTGCCGTCTAATTTGAGCGGTGGACCAAACCCTAGCTTGGATTACGGCTTCAAAGGTGCAGAAATCGCCATGGCTGCTTATTGCTCCGAGCTCCAATACTTAGCAAACCCTGTCACAACTCATGTCCAGAGTGCAGAACAACACAATCAAGATGTTAACTCTCTAGGTCTAATCTCAGCCAGAAAATCCGCCGAAGCCATCGAGATTCTCAAGCTCATGTCCGCTACATACATGGTGGCGCTCTGCCAAGCAATCGATTTAAGACAACAAGAAGAAAATATGAGGGAAGTTGTGAGAAACGCAGTTCTACAAACAATCAGAAGAACACTATACGTTACAGACTACGGATCTCTCACCGAATCGCGATTCTGCGAGAAAGATCTATTGCAAGTAATCGATCGCGAACCAGTTTTCTCCTACATCGACGATCCTACGAACACCTCATACGCCCTAATCCCAAAATTACTGGAAGTTCTAGTCCAAAGAGCGCTGAAAGGGATTGCAACAGCCAAAAACGAGAACGGAAACGAAACAGGCATTGCAATTTTCAAGCAAATCCCGGGGTTTCTTGAGGAATTAAAGGAGAAATTGGAAAACGATGTGGAAAATGCGAGAGGGAGATTTGAGAATGGTGAATTCTTAGTGGAAAATAGAATCAAGAAATGCAGCACTTACCCGATCTATCGCTTTGTGAGGACTGAAGTAGGTACTCAGCTGCTCAGTGGAGCGAAGAAGGTGAGCCCTGGAGAAGATATTGAGAAAGTGGTGGACGCCATTAATGAAGGGAAGCTTGGAAGCATTGTGCTCGAGTGTTTGAAGAATTAG 2136 46.68 MANSEFFCSSPLSQPDSVPQSKSFSFVSPSDYWNKAANALSHTHLEEVCRMLSEFQDARVVDIEGATLTVAQVTAIARRSDVKVNLNEAVAHDRVAKSATWVAEKISSGTDIYGVTTGFGSTSHRRTTKAADLQTELIRFLNAGVIGKDNLPSGYSKAAMLVRTNTLMQGYSGIRWEILEAVVKLMNENLVPKLPLRGTITASGDLVPLSYIAGVITGRHNSKVTTIEGDEITAMEALNRAGIAGPFELQAKEGLALVNGTAVGSAVAATVCYDANILALLAVVLSALFCEAMLGKPEFADPLTHKLKHHPGQIESAAAMELLLNQSDFMKEAKIRHENNPLTKPKQDRYALRTSPQWLGPQIEVIRMATHSIEREINSVNDNPLIDVSRNLALHGGNFQGTPIGVSMDNLRIAIAAIGKLMFAQFSELVCDHFNNGLPSNLSGGPNPSLDYGFKGAEIAMAAYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISARKSAEAIEILKLMSATYMVALCQAIDLRQQEENMREVVRNAVLQTIRRTLYVTDYGSLTESRFCEKDLLQVIDREPVFSYIDDPTNTSYALIPKLLEVLVQRALKGIATAKNENGNETGIAIFKQIPGFLEELKEKLENDVENARGRFENGEFLVENRIKKCSTYPIYRFVRTEVGTQLLSGAKKVSPGEDIEKVVDAINEGKLGSIVLECLKN 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3597743 3599878 - CmoCh10G007740.1 Cmo10g00774 390120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00774 711 SUPERFAMILY L-aspartase-like 32 710 IPR008948 GO:0003824
Cmo10g00774 711 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 32 710 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cmo10g00774 711 PANTHER HISTIDINE AMMONIA-LYASE 34 710 IPR001106 -
Cmo10g00774 711 Gene3D Fumarase/aspartase (Central domain) 262 710 - -
Cmo10g00774 711 Pfam Aromatic amino acid lyase 68 543 IPR001106 -
Cmo10g00774 711 Gene3D - 528 654 IPR023144 -
Cmo10g00774 711 Gene3D - 23 261 IPR024083 -
Cmo10g00774 711 PANTHER PHENYLALANINE AMMONIA-LYASE 34 710 - -
Cmo10g00774 711 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841
Cmo10g00774 711 CDD PAL-HAL 67 525 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00774 Cmo-Chr10:3597743 Cmo07g00951 Cmo-Chr7:4597899 0 dispersed
Cmo10g00774 Cmo-Chr10:3597743 Cmo07g00948 Cmo-Chr7:4557877 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00774 K10775 - csv:101205510 1220.68