Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00779 ATGGCGGATAAGAAAGGGATGGAACAAGTTGTTTTACGGATTTTGGATGGCGAAGAAGGAGTCGATGCAAGGAATGGTCTCACTAATGGCTCTGTTGCTTCTTTTCCTGATTTTGAGCCAAAAGAAACTCGGAGTCTTAGGTGCGCAATCACGCAATCCGTGGTTGAGAGCTCTCCTTCACACGAGATTTCCAGAATGAGTTCATCGAAACCTCCAAAAATTCCTGTCGAATCGGCAGTTCGACGCCCATCATTTGCTCGATCTTCGTTTTCAAAACCGAAATCAAGGCTAATAGAGCCGCCTCGTCCTGATGGTGCAAGTTTGGCGGAAGAAAATGCTCAAGCAAAATCAGCATCTGGTTCACCATTCTCTAGCTCTCCGAAGATGGACTCACCAGCTAAGATAGCCACTGCGACTAGTCCTAAAGAATCTTTGAAGTCTGCTCCGATAACTCCTAGAACACCATTGGTTGGATCTACGGGAAGTGAGGAGGAAGATGATGAAGAAGTCTACAAAACTGCAGAACTGAAAGTGAAAGAAAAATCAAGGAAGAAATTGAAAAGAGCAGTTGTAATTGAATGGATTGCATTTTTGTGCATAACAGCGTGTTTAATTTCCAGCTTAACAATAGACAAGTTGCTGACTAAAGAGATCTGGGGATTAGGACTGTGGAAATGGTGTGTTTTGGTATTAGTTATTTTCTGTGGCCGTTTATTTTCACAATGGTTTATCAATTGTCTGGTTTTCTTGATTGAAAGAAACTTTCTACTTAAGAGAAAGGTTCTTTATTTTGTCTATGGGCTGAGGAAGAGTGTTATAGTTTTTATTTGGCTGGCTTTGGTTCTTCTAGCGTGGGGTCTATTGTTTGATCAAAGCATCAAAAGATCTAAGAAAGTCAATGAGATTCTGAATTATGTTACACGAGCTCTTGCTGCTTCGCTAATTGGAGCAGGATTATGGCTGGTGAAAACTTTGTTGGTGAAGATACTAGCTGCATCTTTTCAATGCACTCGATTCTTCGATCGGATTCAAGAATCAATCTTCCATCAATATATCCTGCGCACTCTATCAGGACCTCCACTGATGGAGATGGCCGAGAGGGTTGGGGGAGCGGCAAGCTCAGGGCAATTGAGCTTCAGGCATTTGAAGAAAGAAAGAGATGGTGGGAATGAGGGGAAGGAAGAAGTGATTGATGTGGATAAACTCAAAAAGATGAAGCAAGAAAAAGTGTCTGCTTGGACCATGAGAGGGCTGATCAATGTTATTAGGAGTTCAGGGCTGTCCACCATCTCTAATACAATAGAGAATTTTAAAGAGGAAGAGGGTGAGCAAAAAGACAAGGAGATTAACAGTGAATGGGAAGCAAGTGCTGCAGCTTACCAGATTTTCAGGAACGTTGCGAAACCTGGTAGCAAGTATATTGATGAAGAGGACCTCTTTCGTTTTATGAACAAGGAGGAAATTGATAATGTGCTGCCATTGTTTGAAGGAGGGGTTGAGACTGGGAAGATAAAGCGAAAAACCCTTAAGAATTGGCTGGTGAATGTTTATATCGAACGGAAGTCGCTAGCCCACTCATTGAACGACACCAAAACTGCCATAGAGGAGCTAAACAGGCTTGCTTCTGCATTTGTACTGATTGTTATTATCATTGTATGGCTACTTCTGATGGGTTTCTTGACCACACAAGTACTCGTCTTCATTTCATCACAGCTTCTACTGGTGGTTTTCATGTTTGGTAACACTGCCAAAACTATATTCGAAGCAATCATATTCGTATTCGTGATGCATCCATTTGACGTGGGGGATCGGTGTGTTGTAGATGGTGTTCAGATGATTGTTGAAGAAATGAACATTTTAACCACAATTTTCTTGAGATATGACAATGAGAAGATCTTCTATCCAAATTCTGTTCTGGCCACCAAACCCATCAGTAACTTCTACAGGAGCCCCGAAATGAGTGATTCGATCGACTTTTCGGTTGACTTTTCCACATCAATTGAAAGCATTGGAGCCCTAAAAGCAAGAATAAAATCATATCTTGAAAGCAAACCTCAGTTCTGGCGGCCGAACCACAGCGTGATCGTGAAGGAGATCGAGAATGTCAACAAGATGAAACTGAGTCTATACATCAATCACACCATAAACTTTCAGAACTATGGTGACCGGAGCAGTCGCAGATCGGATCTAGTCTTGGAGCTGAAGAAAATTTTCGAAGATCTGGGCATCAAGTATCATCTGCTACCTCAAGAAGTCCAGCTCAACTATTTGAGTTCAGTAGCTCCCATGGTTTCGACAACCTTGCGGAGATGA 2313 42.11 MADKKGMEQVVLRILDGEEGVDARNGLTNGSVASFPDFEPKETRSLRCAITQSVVESSPSHEISRMSSSKPPKIPVESAVRRPSFARSSFSKPKSRLIEPPRPDGASLAEENAQAKSASGSPFSSSPKMDSPAKIATATSPKESLKSAPITPRTPLVGSTGSEEEDDEEVYKTAELKVKEKSRKKLKRAVVIEWIAFLCITACLISSLTIDKLLTKEIWGLGLWKWCVLVLVIFCGRLFSQWFINCLVFLIERNFLLKRKVLYFVYGLRKSVIVFIWLALVLLAWGLLFDQSIKRSKKVNEILNYVTRALAASLIGAGLWLVKTLLVKILAASFQCTRFFDRIQESIFHQYILRTLSGPPLMEMAERVGGAASSGQLSFRHLKKERDGGNEGKEEVIDVDKLKKMKQEKVSAWTMRGLINVIRSSGLSTISNTIENFKEEEGEQKDKEINSEWEASAAAYQIFRNVAKPGSKYIDEEDLFRFMNKEEIDNVLPLFEGGVETGKIKRKTLKNWLVNVYIERKSLAHSLNDTKTAIEELNRLASAFVLIVIIIVWLLLMGFLTTQVLVFISSQLLLVVFMFGNTAKTIFEAIIFVFVMHPFDVGDRCVVDGVQMIVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSIDFSVDFSTSIESIGALKARIKSYLESKPQFWRPNHSVIVKEIENVNKMKLSLYINHTINFQNYGDRSSRRSDLVLELKKIFEDLGIKYHLLPQEVQLNYLSSVAPMVSTTLRR 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3619191 3622282 + CmoCh10G007790.1 Cmo10g00779 390125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00779 770 MobiDBLite consensus disorder prediction 46 67 - -
Cmo10g00779 770 PIRSF Memb_At2g17000 18 768 IPR016688 -
Cmo10g00779 770 SUPERFAMILY Sm-like ribonucleoproteins 588 647 IPR010920 -
Cmo10g00779 770 MobiDBLite consensus disorder prediction 20 165 - -
Cmo10g00779 770 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 3 759 IPR016688 -
Cmo10g00779 770 MobiDBLite consensus disorder prediction 112 158 - -
Cmo10g00779 770 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 3 759 - -
Cmo10g00779 770 Pfam Mechanosensitive ion channel 542 744 IPR006685 GO:0016020|GO:0055085
Cmo10g00779 770 Gene3D - 598 647 IPR023408 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00779 Cmo11g00734 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00984 Cmo-Chr8:6407182 Cmo10g00779 Cmo-Chr10:3619191 0 dispersed
Cmo09g00080 Cmo-Chr9:370101 Cmo10g00779 Cmo-Chr10:3619191 6.52E-140 dispersed
Cmo10g00779 Cmo-Chr10:3619191 Cmo17g00074 Cmo-Chr17:385654 0 dispersed
Cmo01g01806 Cmo-Chr1:13267027 Cmo10g00779 Cmo-Chr10:3619191 0 wgd
Cmo10g00779 Cmo-Chr10:3619191 Cmo11g00734 Cmo-Chr11:3563852 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00779 K22048 - csv:101209209 1264.98