Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00789 ATGAGCGCTAGAAGTATGTTTCCCTTCACCTCAGCTCAGTGGCAGGAGCTTGAAAATCAAGCTCTCGTCTTCAAATACATGGTTTCTGGTGTTCCTATACCTCCTGATCTCCTTTTCAGTATTAAAAGAAGTACCTTGGAGTCTCCTTTCACTTCTAAGCTCTTCCCACACCATTCTCAACATGGTATATCAACATCTCTCTCTCTCTCTCTCTTACTTTCTCTTTCTCTCTCTGAAATGTTTGTGTTTCATGCAGTTGGATGGAACTGTTTGCAGATGAGTTTGGGGAGGAAGATAGACCCAGAACCAGGGAGGTGCAGGAGAACTGATGGGAAAAAGTGGAGATGCTCAAAAGAGGCGTACCCAGATTCGAAATACTGTGAGAGGCACATGCATAGAGGCAAGAATCGTTCAAGAAAGCCTGTGGATGTTCTGAAAACAACAGCAACAAACGAGTTAAACCACCTCTCAAGTCAAGCATTTTCTTCCTTAAATAAGAACTCATCCTTACACTCCTATCGGCCCTTCCCCGCTCCTCAAATGTCTTCAAATCCTAATGGGAATGGCATATCAACCAAAGATACCAATACCCTCTTGCTTCTGGATCCTGGTTCTTACTCGGACAGAGGCCCAGATTACAGGTACACTTATGGGCTAAAAGAGGAAGTGGATGAGCATGTTTTCTTTTCGCAAGAACCATCTGAAGCTACTGCGAGAGCTGATTTCTCTGCTTCTTCCACCGTTGATTCTCTGCAATTGACACCACTAACGATGAGTTGTTCTTCTCTATACCCAAAACAAAACAACTTCTCCTCTTTGCAGAGTGGTCAATCATGTTATCAGCTTCATCAGAGCCTCACAGACCCTTTAAAGCAACAAAAGAGAGAGGAATCGCAGAAGAAAGTTCATCGATTCTTCGATGAATGGCCTCAAAAAGGAGGATCATGGCTTGATTTTAACGATAAATCTTCAAATATTGGCTCAGTCTCCACCACTCGGCTCTCAATTTCCATTCCCACCGCTTCCAACGAACTCCCCATTTTCAGATCCAAAAACCCATAA 1062 43.5 MSARSMFPFTSAQWQELENQALVFKYMVSGVPIPPDLLFSIKRSTLESPFTSKLFPHHSQHGISTSLSLSLLLSLSLSEMFVFHAVGWNCLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNELNHLSSQAFSSLNKNSSLHSYRPFPAPQMSSNPNGNGISTKDTNTLLLLDPGSYSDRGPDYRYTYGLKEEVDEHVFFSQEPSEATARADFSASSTVDSLQLTPLTMSCSSLYPKQNNFSSLQSGQSCYQLHQSLTDPLKQQKREESQKKVHRFFDEWPQKGGSWLDFNDKSSNIGSVSTTRLSISIPTASNELPIFRSKNP 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3672292 3673768 - CmoCh10G007890.1 Cmo10g00789 390135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00789 353 MobiDBLite consensus disorder prediction 172 205 - -
Cmo10g00789 353 ProSiteProfiles WRC domain profile. 100 144 IPR014977 -
Cmo10g00789 353 PANTHER GROWTH-REGULATING FACTOR 6 5 341 - -
Cmo10g00789 353 PANTHER - 5 341 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cmo10g00789 353 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cmo10g00789 353 MobiDBLite consensus disorder prediction 172 202 - -
Cmo10g00789 353 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cmo10g00789 353 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cmo10g00789 353 Pfam WRC 101 142 IPR014977 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01417 Cmo10g00789 CCT
Cmo05g01417 Cmo10g00789 ECH
Cmo10g00789 Cmo11g00738 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00038 Cmo-Chr1:125736 Cmo10g00789 Cmo-Chr10:3672292 4.76E-65 dispersed
Cmo02g00480 Cmo-Chr2:2635465 Cmo10g00789 Cmo-Chr10:3672292 4.92E-65 dispersed
Cmo10g00789 Cmo-Chr10:3672292 Cmo14g01265 Cmo-Chr14:10619218 1.39E-63 dispersed
Cmo10g00789 Cmo-Chr10:3672292 Cmo11g00738 Cmo-Chr11:3593611 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10480 PF08879 WRC 1.20E-20 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00789 - - cpep:111780092 692.189