Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00813 ATGCACTGCTTTCCAGTTTCTAGGGTTTATCTTCATCGTTCTTCTATAATCTTCTATCCAATTGGAGCCGCTTCTCCATCTTTATCTTCAGAACGTGAAATGGCGACAGCTCAACTCGCTGGGTCTTTAATTTCTGCGAGGAACTTGCCTTCTTTCAGTGGGCTTCGACCTTCTGCGGTGAAATTCTCTCCTTCTGTTGCTCATGTGAGAGTCGGGGGTCGGTCTAAGAGATCTTACACTGGCTTGGTCGTCAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATCAAGCCATTGGGCGACAGAGTGTTGGTGAAGATAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACCGCTCAGTCTAAACCCCAAGGAGGAGAGGTTGTTGCAGTTGGAGAAGGCAAGACAATCGGAAACACCAAAGTGGAAGCTAGTGTAAAGACTGGTGCTCAAGTAGTGTACTCCAAGTATGCTGGAACTGAGCTAGAGTTCAACGGTTCAAAGCATCTTATCTTGAAGGAAGACGATATAGTTGGTATACTAGAAACAGATGACGCGAAAGATCTTCAGCCCCTAAATGACAGGGTCTTGATCAAGGTGGCCGAGGCCGAGGAGAAAACAGCCGGAGGTTTGTTGCTGACAGAAGCAAGCAAAGAGAAACCATCCATCGGAACGGTGATAGCAGTTGGCCCTGGTCATCTGGAGGAGGATGGCAAGAGGAAACCGCTATCCATTGCCGTGGGAGATAACGCGATGTACTCTAAGTACGCTGGGAACGAGTTCAAGGGCAAAGATGGCTCTGATTACATCGCATTGAGGGCTACGGACGTTATTGCAGTTCTATCGTAG 867 47.75 MHCFPVSRVYLHRSSIIFYPIGAASPSLSSEREMATAQLAGSLISARNLPSFSGLRPSAVKFSPSVAHVRVGGRSKRSYTGLVVRAATVVAPKYTSIKPLGDRVLVKIKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKTAGGLLLTEASKEKPSIGTVIAVGPGHLEEDGKRKPLSIAVGDNAMYSKYAGNEFKGKDGSDYIALRATDVIAVLS 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3788365 3791355 + CmoCh10G008130.1 Cmo10g00813 390159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00813 288 PANTHER 20 KDA CHAPERONIN, CHLOROPLASTIC 34 288 - -
Cmo10g00813 288 ProSitePatterns Chaperonins cpn10 signature. 97 121 IPR018369 GO:0005524|GO:0006457
Cmo10g00813 288 Hamap Co-chaperonin GroES [groES]. 96 188 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo10g00813 288 CDD cpn10 96 187 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo10g00813 288 ProSitePatterns Chaperonins cpn10 signature. 195 219 IPR018369 GO:0005524|GO:0006457
Cmo10g00813 288 PRINTS 10kDa chaperonin signature 119 140 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo10g00813 288 PRINTS 10kDa chaperonin signature 174 187 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo10g00813 288 PRINTS 10kDa chaperonin signature 97 112 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo10g00813 288 PRINTS 10kDa chaperonin signature 153 165 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo10g00813 288 SMART Cpn10_2 194 287 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo10g00813 288 SMART Cpn10_2 96 187 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo10g00813 288 Hamap Co-chaperonin GroES [groES]. 194 288 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo10g00813 288 PANTHER 10 KDA HEAT SHOCK PROTEIN 34 288 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo10g00813 288 Gene3D GroES chaperonin 89 189 IPR037124 GO:0006457
Cmo10g00813 288 Gene3D GroES chaperonin 190 288 IPR037124 GO:0006457
Cmo10g00813 288 SUPERFAMILY GroES-like 194 287 IPR011032 -
Cmo10g00813 288 PIRSF Cpn21 34 288 IPR017416 GO:0006457|GO:0046914|GO:1901671
Cmo10g00813 288 Pfam Chaperonin 10 Kd subunit 97 186 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo10g00813 288 Pfam Chaperonin 10 Kd subunit 195 286 IPR020818 GO:0005524|GO:0006457|GO:0140662
Cmo10g00813 288 SUPERFAMILY GroES-like 95 188 IPR011032 -
Cmo10g00813 288 CDD cpn10 195 287 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01305 Cmo-Chr7:7267547 Cmo10g00813 Cmo-Chr10:3788365 4.41E-170 dispersed
Cmo10g00813 Cmo-Chr10:3788365 Cmo17g00068 Cmo-Chr17:357751 4.95E-06 dispersed
Cmo10g00813 Cmo-Chr10:3788365 Cmo08g00935 Cmo-Chr8:6083155 1.24E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00813 K04078 - csv:101212396 448.743