Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00839 ATGGCTTCTACTTTCACAGCCATGTCTTCCGTTGGTACCCTTGCTGCACCTGGAAGCCGTGTCGTGGATAAAAAGCTTCTATCGTCTTCTGATAAGTTGACTTCTCGCACGTCCATTTCTTCATTTGCGCTCCCGAAAAGACAGAGCGTAGTTCTTAGAAGAAACCGTTCTTCCAAGATCTCTGCCATGGCGAAGGAGTTGCACTTCAACCAGGATGGTTCGGCTATTAAGAAATTACAGAATGGTGTGAACAAACTTGCAGACTTGGTCGGAGTTACTCTTGGTCCTAAAGGAAGAAATGTGGTTCTTGAGAGCAAGTATGGCTCCCCGAAAATTGTCAATGATGGTGTAACCGTTGCAAAAGAGGTTGAGTTGGAGGATCCAGTTGAGAACATTGGTGCTAAGCTAGTCAGACAAGCTGCTGCAAAGACCAACGACTTAGCCGGAGATGGAACGACAACTTCAGTTGTTTTGGCTCAGGGTCTTATTGCTGAAGGTGTCAAGGTCGTGGCAGCTGGAGCAAACCCTGTTCTTATCACAAGAGGCATTGAAAAAACGGCCAAAGCGCTGGTTTCTGAACTCAAACAAATGTCGAAAGAGGTTGAAGACAGCGAATTGGCCGATGTGGCTGCAGTTAGTGCTGGAAATAACTACGAAGTGGGTAACATGATAGCCGAAGCCATGAGCAAGGTAGGACGAAAGGGTGTGGTGACTCTTGAAGAGGGAAGGAGTGCCGATAACAGTCTCTATGTCGTCGAAGGAATGCAGTTTGACAGGGGTTATATCTCTCCTTATTTTGTCACCGATAGCGAGAAAATGGCTGTGGAATTCGATAATTGCAAGCTGCTTCTTGTTGACAAAAAGATCACTAATGCAAGGGATCTTATTAACATACTGGAAGAGGCCATCAGAGGTGGTTATCCCGTTTTGATAATGGCCGAGGATATCGAGCAAGAAGCTCTGGCAACTCTTGTAGTAAACAAACTGAGAGGATCTTTGAAGATCGCTGCACTTAAAGCTCCAGGGTTTGGCGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATTCTTACTGGAGGCACGGTTATCAGAGAGGAGGTCGGGCTTTCCTTAGACAAAGCGGGAAAGGAGGTACTTGGAACTGCATCCAAGGTCGTGCTTACCAAAGATACCACGACAATTGTTGGCGACGGTAGCACCCAAGACGCAGTTTCTAAGCGTGTTGCACAGATTAAAACTCTGATTGAGGCTGCAGACCAGGACTACGAGAAAGAGAAACTTAACGAGAGAATCGCCAAACTTTCTGGTGGTGTAGCAGTTATACAGGTTGGAGCACAAACCGAGACCGAACTCAAGGAAAAGAAACTGAGAGTTGAAGACGCTCTTAACGCTACGAAGGCAGCTGTTGAGGAAGGTATTGTTGTTGGCGGTGGTTGCACCCTCCTTAGACTCGCATCGAAGGTCGACGCGATCAAGGAATCCTTTGAAAATGATGAAGAGAAGGTCGGAGCAGACATTGTCAAGAGAGCATTAGCTTATCCCCTCAAGCTGATAGCGAAGAACGCCGGTGTCAACGGTAGCGTTGTTAGCGAGAAGGTGTTGTCCAGTGACAACTTTAGATATGGATACAATGCTGCAACTGGGAATTATGAAGACCTTATGGCTGCTGGAATCATCGATCCAACCAAGGTGGTTAGATGCTGCTTAGAACACGCAGCTTCAGTGGCGAAGACATTCTTGATGTCGGACTGCGTGGTGGTGGAGATCAAGGAGCCTGAACCAGTTGCTGCCGGCAATCCCATGGACAATTCAGGATATGGGCAGCTAGCTATGAATGGTGTTAAAAAGAGGCCATTTTTCTTGTTTATTTTTGTAGATTCAGCCATTTCTTTGTCCTAA 1899 46.76 MASTFTAMSSVGTLAAPGSRVVDKKLLSSSDKLTSRTSISSFALPKRQSVVLRRNRSSKISAMAKELHFNQDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTAKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGRSADNSLYVVEGMQFDRGYISPYFVTDSEKMAVEFDNCKLLLVDKKITNARDLINILEEAIRGGYPVLIMAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKAGKEVLGTASKVVLTKDTTTIVGDGSTQDAVSKRVAQIKTLIEAADQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKESFENDEEKVGADIVKRALAYPLKLIAKNAGVNGSVVSEKVLSSDNFRYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEPVAAGNPMDNSGYGQLAMNGVKKRPFFLFIFVDSAISLS 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3944731 3948942 + CmoCh10G008390.1 Cmo10g00839 390185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00839 632 ProSitePatterns Chaperonins cpn60 signature. 467 478 IPR018370 GO:0005524|GO:0006457
Cmo10g00839 632 SUPERFAMILY GroEL-intermediate domain like 203 268 IPR027410 -
Cmo10g00839 632 SUPERFAMILY GroEL apical domain-like 247 438 IPR027409 -
Cmo10g00839 632 Pfam TCP-1/cpn60 chaperonin family 86 589 IPR002423 GO:0005524
Cmo10g00839 632 PRINTS 60kDa chaperonin signature 90 116 IPR001844 GO:0042026|GO:0140662
Cmo10g00839 632 PRINTS 60kDa chaperonin signature 330 353 IPR001844 GO:0042026|GO:0140662
Cmo10g00839 632 PRINTS 60kDa chaperonin signature 412 437 IPR001844 GO:0042026|GO:0140662
Cmo10g00839 632 PRINTS 60kDa chaperonin signature 146 173 IPR001844 GO:0042026|GO:0140662
Cmo10g00839 632 PRINTS 60kDa chaperonin signature 460 481 IPR001844 GO:0042026|GO:0140662
Cmo10g00839 632 Hamap Chaperonin GroEL [groEL]. 63 614 IPR001844 GO:0042026|GO:0140662
Cmo10g00839 632 SUPERFAMILY GroEL equatorial domain-like 72 586 IPR027413 -
Cmo10g00839 632 CDD GroEL 65 588 IPR001844 GO:0042026|GO:0140662
Cmo10g00839 632 Coils Coil 187 207 - -
Cmo10g00839 632 TIGRFAM GroEL: chaperonin GroL 64 591 IPR001844 GO:0042026|GO:0140662
Cmo10g00839 632 Gene3D - 200 472 IPR027410 -
Cmo10g00839 632 Gene3D GroEL 254 435 IPR027409 -
Cmo10g00839 632 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 8 605 - -
Cmo10g00839 632 PANTHER CHAPERONIN 60 SUBUNIT BETA 1, CHLOROPLASTIC 8 605 - -
Cmo10g00839 632 Gene3D - 74 587 IPR027413 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00839 K04077 groEL, HSPD1; chaperonin GroEL [EC:5.6.1.7] - csv:101217516 1105.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01021 Cmo-Chr8:6634096 Cmo10g00839 Cmo-Chr10:3944731 1.24E-166 dispersed
Cmo10g00839 Cmo-Chr10:3944731 Cmo18g01097 Cmo-Chr18:11442586 0 dispersed
Cmo10g00839 Cmo-Chr10:3944731 Cmo17g00129 Cmo-Chr17:743294 9.73E-167 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g23 . Blo03g01403 . . . . . Bma07g01362 Cmo10g00839 . Cma10g00809 . . . Sed08g0970 Cpe05g00805 . Bhi02g01722 Tan09g1009 Cmetu02g1328 . Hepe09g0981 . . . . . . . . . . . . . Lsi06g00390 . . . . . Bda07g00778 Bda09g00347 . Bpe11g00952 . . . . . Cma11g00774 . . . . Cpe04g00986 . . . . . . . Cla03g01403 Cam03g1482 Cec03g1520 Cco03g1515 Clacu03g1504 Cmu03g2061 Cre03g1735 . Csa01g03042 Chy02g01320 Cme02g00353
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001807 3 2 3 1 3 2 3 1 2 1 2 2 3 2 2 2 2 4 3 2 2 2 1 2 2 2 2 4 2 3 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00839 Cmo_Chr10 FPKM 7.899371 9.434805 12.390509 16.254133 41.474346 42.176441 44.532917 15.278386 12.855065 12.696771