Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00845 ATGGAAGCCTCCTTTGCATCCTATTGTTGTTTGTGTTTCATCCTCTTCCTTTCCCTCTTTCCCATCCAATCAGTCAGCCAATACCCATATTTAGGCACTGCAAACCAGACATCCGGGTGCTCTATCAATGATACCAATTCAACACCAAATGGATATTATTCATGTAAGCATTTTCCTGCTGGCTCGTGTTCTTCCTATTTGATTGCAAAATCCAAGTCTCACAATCATGACTTGGGTTTCTACGATACATCATTTGGAAACACTAATTTGGTGATGAAGGCAGTTGGTTGTAGCTGTGGTGGGGGTCATTTGTATGGGAATATCACGGAATATAATACTACGAGTGGTGATAGTTATGAAACAATAGCCAATCATGTTTTTTATGGCTTCACCAGCTGTTCTATGTTGAGAAGCTTTAACCCCAACCATTCTATGGATATCAATGCTTCCTCAACAGAAGGAATTAGTGTTGAAGTTCCGTTGAGATGCGCTTGTCCTACCCAGGATCAGAAGAAGGTTGGGATTCACTCATTGGCTGTGTATATGGTACAACCAAATGAGAGCATTACATCAATAGCCAGGGATTTGTTGGTTGACAAAGACACCATTTTGGATGCAAACATGCTTTCCAATACAACCCAACTCTACCCATTTACGCCTCTTTTGGTTCCGTTGAACACATACGAGACTTGCAAACTCGATCCATCTAACTCAGACGCCTGTGTATCTCCGTATTTGGAGTGGTATCTCAAATATGCTGCTACTATTGGTTTCATCATCTTCATTGCATTTGGTCCGTCTCTTTCTCTTGCCTTGCAAAACGGAGGCCTTGTATTGCAGCAAAAGCTACTAGAAGATAATGAGAGGGTCAAAATATTCTTACAGGAAGAACTTGAAGAAGCAACTCATAATTACAGCCAAACTAGATTTCTTGGTCAAGGAGGGTTTGGTGCAGTTTACAAAGGGATACTCCATGATAACACTATTGTTGCAGTCAAAAGGTCCAAGCGAATTGAAGAAGCCTGGATTGAACAATTCATCAACGAGGTTATCATTCTCTCTCGAATTAACCACAAAAATATTGTTCGCCTTATTGGGTGCTGCCTAGAAACTGAGTTTCCTTTGTTAGTCTATGAATTTGTTTCCAATGGCACGCTTTTGAGCCATCTCCACCACACAGATCATGGAGAATCGCCATCTCTTTCATGGGAAACTCGTCTTGGAATTGCCTCTGAAGTTGCTGGAGCTATCTCTTACATGCATTCTGCCGCTTCAACTCCCATCTTTCATAGAGATATCAAGTCTCTTAACATTCTTTTGGAGGATAATTATAATGCAAAAGTTTCTGATTTTGGGACTTCCAGATTTGTTTCATGTGATCAATCTCATTTGACTACGAAAGTGCATGGAACTCTAGGATACATTGATCCTGAGTACTTTAAATCAAGTCAGTATACTGAGAAGAGTGATGTTTATAGTTTTGGAGTCGTAATGGTAGAGCTTTTAACGGGGAAACATCCTACCATATTTGCAAGAAATGAGGAACGAAATCTATTAGAGGACTTCATTGCATTGGAAAATGGTAAGGAGGTTGTTGGAATCGTGGATAGTGCAATAGCCAAAGATGAAGAAACGATGGAGGGTGTTAACTTGGTGGCAAAACTCACGGCCAAATGTTTAAGAGCAAATGGGAAAGAGAGGCCTACAATGAAACAAGTGTATTTAGAACTAGAGGGATTGAAGAAGACTCAAACTCAACGTTGTTCAACAATTGCTGGAGAAAGCAAATCAATTGGAAGCTATTCATTTTGCTCTATGGCTCCTAGTAGTGACGATCTTCCAAGATGA 1848 40.37 MEASFASYCCLCFILFLSLFPIQSVSQYPYLGTANQTSGCSINDTNSTPNGYYSCKHFPAGSCSSYLIAKSKSHNHDLGFYDTSFGNTNLVMKAVGCSCGGGHLYGNITEYNTTSGDSYETIANHVFYGFTSCSMLRSFNPNHSMDINASSTEGISVEVPLRCACPTQDQKKVGIHSLAVYMVQPNESITSIARDLLVDKDTILDANMLSNTTQLYPFTPLLVPLNTYETCKLDPSNSDACVSPYLEWYLKYAATIGFIIFIAFGPSLSLALQNGGLVLQQKLLEDNERVKIFLQEELEEATHNYSQTRFLGQGGFGAVYKGILHDNTIVAVKRSKRIEEAWIEQFINEVIILSRINHKNIVRLIGCCLETEFPLLVYEFVSNGTLLSHLHHTDHGESPSLSWETRLGIASEVAGAISYMHSAASTPIFHRDIKSLNILLEDNYNAKVSDFGTSRFVSCDQSHLTTKVHGTLGYIDPEYFKSSQYTEKSDVYSFGVVMVELLTGKHPTIFARNEERNLLEDFIALENGKEVVGIVDSAIAKDEETMEGVNLVAKLTAKCLRANGKERPTMKQVYLELEGLKKTQTQRCSTIAGESKSIGSYSFCSMAPSSDDLPR 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3991282 4002079 - CmoCh10G008450.1 Cmo10g00845 390191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00845 615 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Cmo10g00845 615 Pfam Protein kinase domain 305 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00845 615 Gene3D LysM domain 177 232 IPR036779 -
Cmo10g00845 615 Coils Coil 284 304 - -
Cmo10g00845 615 ProSiteProfiles LysM domain profile. 179 223 IPR018392 -
Cmo10g00845 615 SUPERFAMILY Protein kinase-like (PK-like) 290 577 IPR011009 -
Cmo10g00845 615 SMART LysM_2 180 224 IPR018392 -
Cmo10g00845 615 Pfam LysM domain 181 224 IPR018392 -
Cmo10g00845 615 SMART serkin_6 305 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00845 615 ProSiteProfiles Protein kinase domain profile. 305 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00845 615 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 62 249 IPR045274 GO:0007166
Cmo10g00845 615 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 272 598 IPR045274 GO:0007166
Cmo10g00845 615 CDD STKc_IRAK 311 580 - -
Cmo10g00845 615 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Cmo10g00845 615 Gene3D Transferase(Phosphotransferase) domain 1 381 601 - -
Cmo10g00845 615 PANTHER LYSM TYPE RECEPTOR KINASE 62 249 - -
Cmo10g00845 615 PANTHER LYSM TYPE RECEPTOR KINASE 272 598 - -
Cmo10g00845 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00845 Cmo-Chr10:3991282 Cmo15g00654 Cmo-Chr15:3163820 7.94E-112 dispersed
Cmo10g00844 Cmo-Chr10:3979960 Cmo10g00845 Cmo-Chr10:3991282 2.72E-104 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74628 PF00069 Pkinase 3.90E-51 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00845 - - mcha:111019878 640.573