Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00859 ATGGAGTACGATTCTGGAATTCCGATGTCTGTGACGGAGGGACACTCCTCTGCTCTCACACCATCTTTGCGCGAAGATGCACTGTGGCAAATGAACTTAGGATCAGGTGAAATAATGGGATCTGGATCTTATCCCGTGCGACCCGGAGAGCCAGACTGTTCTTATTACATCAGAACTGGCCTATGTAGATTTGGAGCTACATGTAGATTTAATCATCCACCTAATAGGGAGCTGGCTATTGCCACTGCAAGAATGAAGGGGGAGTTCCCGGAAAGAATTGGACAACCAGAATGCCAGGCACGAACTTGCAAGTTTGGGGCTACGTGCAAGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATATTATTGGCTATCCACTTCGCCCGAGTGAACCTGAATGTGCTTATTATATAAGAACTGGACAATGTAAGTTCGGAAATACATGTAAATTCCACCATCCTCAACCGACTAATATGATGGTCTCACTGCGCGGTTCTCCTATTTATCCAACCGTACAATCGCCAACTCCTGGTCAGCAATCATATCCAGGAGGAAGTACAAATTGGTCGAGGGCGTCGTTCATTCCCAGTCCACGATGGGAAGGCCCTTCCAGTTATGCATCTTTAATATTGCCTCAGGGAGTTCTTTCTGTTCCAGGTTGGAATGCATTCAATGATCAGCTCGGATCGGTTTCATCTTCAGAAAGTCCACAACAAACGAGGGAGAATGTATTCCCTGAGAGGCCTGGCCAGCCTGAATGTCAGTTTTACATGAAGACTGGAGATTGCAAGTTCGGTGCCGTTTGTCGATTTCATCATCCCAGAGAAAGAGTACTTCCTGCCCCAGATTGTGTCTTGAGTCCTATAGGCCTGCCGTTACGTCCGGGAGAACCTTTGTGCATCTTTTATTCTCGTTACGGGATCTGTAAGTTCGGTCCAAGCTGCAAGTTCGATCACCCTATGGGAATCTTCACATACAATCTCTCAGCAGCAGCAGCAGCAGCAGCAGCATCATCAGCCAACGCCCCAGTTCAGCATTTGTTTGGGACGTCTTCAGGATCAACTGCACTGAACTTGTCATCTGAAGGGCTAGTTGAAGCAGGATCTGCAAAACCGAGACGACTATCGATCTCGGAGACGCGAGAGATGCCATCTGACGACGAAAATATCGACACAGAAGGCTGA 1203 47.63 MEYDSGIPMSVTEGHSSALTPSLREDALWQMNLGSGEIMGSGSYPVRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQARTCKFGATCKFHHPRDKAGIAGRVALNIIGYPLRPSEPECAYYIRTGQCKFGNTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQQSYPGGSTNWSRASFIPSPRWEGPSSYASLILPQGVLSVPGWNAFNDQLGSVSSSESPQQTRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERVLPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSAAAAAAAASSANAPVQHLFGTSSGSTALNLSSEGLVEAGSAKPRRLSISETREMPSDDENIDTEG 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4063513 4069490 - CmoCh10G008590.1 Cmo10g00859 390205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00859 400 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Cmo10g00859 400 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 161 IPR000571 GO:0046872
Cmo10g00859 400 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 327 IPR000571 GO:0046872
Cmo10g00859 400 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 256 281 IPR000571 GO:0046872
Cmo10g00859 400 PANTHER PROTEIN PHOSPHATASE RELATED 10 247 - -
Cmo10g00859 400 PANTHER PROTEIN PHOSPHATASE RELATED 246 399 - -
Cmo10g00859 400 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Cmo10g00859 400 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Cmo10g00859 400 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 10 247 - -
Cmo10g00859 400 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 246 399 - -
Cmo10g00859 400 Pfam RNA-binding, Nab2-type zinc finger 103 114 - -
Cmo10g00859 400 SUPERFAMILY CCCH zinc finger 138 162 IPR036855 GO:0046872
Cmo10g00859 400 MobiDBLite consensus disorder prediction 235 254 - -
Cmo10g00859 400 MobiDBLite consensus disorder prediction 235 251 - -
Cmo10g00859 400 Gene3D - 99 170 - -
Cmo10g00859 400 SUPERFAMILY CCCH zinc finger 303 327 IPR036855 GO:0046872
Cmo10g00859 400 SUPERFAMILY CCCH zinc finger 52 75 IPR036855 GO:0046872
Cmo10g00859 400 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872
Cmo10g00859 400 MobiDBLite consensus disorder prediction 373 400 - -
Cmo10g00859 400 Gene3D - 244 329 - -
Cmo10g00859 400 Gene3D - 46 98 - -
Cmo10g00859 400 ProSiteProfiles Zinc finger C3H1-type profile. 254 282 IPR000571 GO:0046872
Cmo10g00859 400 SUPERFAMILY CCCH zinc finger 258 283 IPR036855 GO:0046872
Cmo10g00859 400 SMART c3hfinal6 134 161 IPR000571 GO:0046872
Cmo10g00859 400 SMART c3hfinal6 92 115 IPR000571 GO:0046872
Cmo10g00859 400 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Cmo10g00859 400 SMART c3hfinal6 300 327 IPR000571 GO:0046872
Cmo10g00859 400 SMART c3hfinal6 254 281 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00859 Cmo-Chr10:4063513 Cmo14g01672 Cmo-Chr14:13175212 3.18E-89 dispersed
Cmo10g00859 Cmo-Chr10:4063513 Cmo11g00965 Cmo-Chr11:5082995 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10483 PF00642 zf-CCCH 2.70E-10 CL0537 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00859 - - cmos:111461480 818.92