Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00860 ATGAGGCTCCAAGTGAACGACGGCGATGTCGACGACGATCTTGTTCCTCCCCCCAACTTCTCCAGTGTTGAGGATGGCATTTTCCGATCCGGCTTCCCTCAGCCTTCCAATTTTCCATTCCTCAAGAATCTAAATCTCCGCTCCATCATATATTTGTGTCCTGAACCCTACCCAGAGGAGAATTTGGAGTTTCTTAGAGCTAATAACATCAAGCTTTTTCAATTCAAAATTGAAGGGACAAAGGAGCCTTTCGTTTCGATTCCGAAGGATGCTATTCTGGACGCCCTAAAAATCCTAATTGATGTTAGGAATCACCCCATTTTGATCCACTGCAAGCGTGGAAAGCATCGAACAGGGTCGCTCGTGGGTTGCCTGAGGAAGTTCCAGAACTGGTGCTTGACATCAGTGTTCGAGGAGTACCAGCGATATGCAGGCGTGAAATCAAGGGCAACGGATCTACAATTCATCGAGGCATTCGACATAGAGCCTCTGAGGCAATGTGTTTACAGCATCATATACCAGTACCAAGGGTATAGCTCAAACAAGAGAAGACTATTGTACAGAGAAGAGAAGTTGCAGAAGCCCCAAACAACACCAGTTTAG 603 46.27 MRLQVNDGDVDDDLVPPPNFSSVEDGIFRSGFPQPSNFPFLKNLNLRSIIYLCPEPYPEENLEFLRANNIKLFQFKIEGTKEPFVSIPKDAILDALKILIDVRNHPILIHCKRGKHRTGSLVGCLRKFQNWCLTSVFEEYQRYAGVKSRATDLQFIEAFDIEPLRQCVYSIIYQYQGYSSNKRRLLYREEKLQKPQTTPV 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4080061 4082388 + CmoCh10G008600.1 Cmo10g00860 390206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00860 200 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791
Cmo10g00860 200 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791
Cmo10g00860 200 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791
Cmo10g00860 200 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791
Cmo10g00860 200 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 170 IPR020422 GO:0006470|GO:0008138
Cmo10g00860 200 Gene3D Protein tyrosine phosphatase superfamily 13 162 IPR029021 -
Cmo10g00860 200 ProSitePatterns Tyrosine specific protein phosphatases active site. 109 119 IPR016130 GO:0016311|GO:0016791
Cmo10g00860 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE 10 183 - -
Cmo10g00860 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 10 183 - -
Cmo10g00860 200 CDD PFA-DSP_Siw14 14 160 - -
Cmo10g00860 200 Pfam Tyrosine phosphatase family 14 164 IPR004861 -
Cmo10g00860 200 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 14 160 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00860 Cmo-Chr10:4080061 Cmo20g00254 Cmo-Chr20:1227643 1.88E-74 dispersed
Cmo10g00860 Cmo-Chr10:4080061 Cmo11g00963 Cmo-Chr11:5063323 9.55E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00860 K18045 - csv:101211082 348.591