Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00895 ATGGATCAGACGGCTCCTAAGTTTCTAGCTGTTGTTCTGTTCTTGTTCGACGCTGTTGAATGCACCATGGGAGTTTCAGGAAAATGGTTCAAAGCGTTAGTTGGTTCGAAGAAGTCAGAAAAATCTCAGTCATCAGAACACGATGAAAACACGAGGACAGCCACCAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATCGATGCAGATAAACTTCAGCACGAGTTTAACTCGAATTTTACACCATTTGTTGAAGAGTCCAATGCTCTTTCAGATCCAGGAACAGCTTCTATTCCTTCTGATTCACTTCAAACATATGATGCATTGCATAATCAACACAACGATATAGAAGAACAGGCCGCGATATGCATCCAAACCATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTCAAGGGATTGGTTAGACTTCAAGCTCTTGTCAGAGGTCATGCTGTCAGGAAACAAGCTGCAATAACTCTACGCTGTATGCAAGCTTTAGTGAGAGTTCAGGCTCGTGTTCGAGCAAGGCATGTACGTATTGCATTGGAAAGTGAGACCGCACAACAAAAACTTCAACAGCAAATTGAAAACCAAGCTCGAGTTCGAGAAATTGAAGATGGTTGGTGCGACACTGTCGGATCTGTTGAAGAAATTCAAGCAAAATTGTTAAAAAGGCAGGAGGCTGCTGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGAACAAGACAACAGGCTGCCCTCTTCCAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGATGGATGGCTGTTCGTCCGTGGGAAAACCGCTTTCTCGACATCAATCTCAAAGACGGAGTGATGATTCGTGAGAACGGATCAGCTGAGGGCAAAAGCAACACTAAATCTCATATACAAACTACTGGCAAGAAAACAAACTTAGTGACTGATCAACCAAACCTCTCGAGCCAAAGAACCGCTGTCTCGCATTCTGATGGATGTGGTTCGTCGTCCCCGACTAAGTCAGCTGGCATTGTAGAGGTATCCAGTGCACAGGTTCAAAAGCTCAAGCATAAACTTGCACCTGAGAGGCCACTTGAACAAGTCAAACCTAAAGTAGATACCGGTTTAAGATCACATCCTGGTAGTCAAAACCGAACGGTGAGAAACTCAACTAGCAAAGCGACCGTTGAACCGAAGCCGATATCAAGAGGTGACTCAAAAGCTGCAAAACCCAGATCACAAAACTGA 1275 45.02 MDQTAPKFLAVVLFLFDAVECTMGVSGKWFKALVGSKKSEKSQSSEHDENTRTATNKFWHRRKHSVDIDADKLQHEFNSNFTPFVEESNALSDPGTASIPSDSLQTYDALHNQHNDIEEQAAICIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARHVRIALESETAQQKLQQQIENQARVREIEDGWCDTVGSVEEIQAKLLKRQEAAAKRERAMAYALAHQWQAGTRQQAALFQFEPDKSSWGWNWLERWMAVRPWENRFLDINLKDGVMIRENGSAEGKSNTKSHIQTTGKKTNLVTDQPNLSSQRTAVSHSDGCGSSSPTKSAGIVEVSSAQVQKLKHKLAPERPLEQVKPKVDTGLRSHPGSQNRTVRNSTSKATVEPKPISRGDSKAAKPRSQN 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4380090 4388355 + CmoCh10G008950.1 Cmo10g00895 390241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00895 424 Gene3D - 118 160 - -
Cmo10g00895 424 Pfam IQ calmodulin-binding motif 120 139 IPR000048 GO:0005515
Cmo10g00895 424 PANTHER IQ-DOMAIN 5-RELATED 15 389 - -
Cmo10g00895 424 ProSiteProfiles IQ motif profile. 142 169 IPR000048 GO:0005515
Cmo10g00895 424 ProSiteProfiles IQ motif profile. 118 146 IPR000048 GO:0005515
Cmo10g00895 424 MobiDBLite consensus disorder prediction 302 351 - -
Cmo10g00895 424 MobiDBLite consensus disorder prediction 301 351 - -
Cmo10g00895 424 MobiDBLite consensus disorder prediction 365 424 - -
Cmo10g00895 424 MobiDBLite consensus disorder prediction 365 382 - -
Cmo10g00895 424 PANTHER IQ-DOMAIN 5-RELATED 15 389 - -
Cmo10g00895 424 SMART iq_5 117 139 IPR000048 GO:0005515
Cmo10g00895 424 SMART iq_5 140 161 IPR000048 GO:0005515
Cmo10g00895 424 MobiDBLite consensus disorder prediction 386 406 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00895 Cmo11g00931 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00981 Cmo-Chr7:4829625 Cmo10g00895 Cmo-Chr10:4380090 8.49E-43 dispersed
Cmo09g00343 Cmo-Chr9:1477225 Cmo10g00895 Cmo-Chr10:4380090 5.66E-43 dispersed
Cmo10g00895 Cmo-Chr10:4380090 Cmo15g00445 Cmo-Chr15:2025442 1.18E-50 dispersed
Cmo12g00368 Cmo-Chr12:2287882 Cmo10g00895 Cmo-Chr10:4380090 1.98E-16 dispersed
Cmo16g00052 Cmo-Chr16:211326 Cmo10g00895 Cmo-Chr10:4380090 7.52E-46 dispersed
Cmo16g01309 Cmo-Chr16:9300627 Cmo10g00895 Cmo-Chr10:4380090 7.82E-19 dispersed
Cmo18g01358 Cmo-Chr18:12787188 Cmo10g00895 Cmo-Chr10:4380090 8.71E-36 dispersed
Cmo07g00202 Cmo-Chr7:1025018 Cmo10g00895 Cmo-Chr10:4380090 1.25E-47 transposed
Cmo16g00447 Cmo-Chr16:2143563 Cmo10g00895 Cmo-Chr10:4380090 9.35E-34 transposed
Cmo10g00895 Cmo-Chr10:4380090 Cmo11g00931 Cmo-Chr11:4836470 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00895 - - csv:101204117 654.44