Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00972 ATGTTTAGTCGAATTGACCCAAATAATATTTTGTACGTTGCTCGAATTCCTTCCGGGTTTGAAGGTATGCAGTCAAAGTCAGAAACCAATAATCAGCTCCAATCTGATCCAAATGGTGCTCCATCCACGACTATCTATTACGAACCCTGGTGCAGTTCTATGGGGTACAGTCCTTTTCCGTTACCTGTGGTTGGGGGAAATGCTTCCAGTTCGACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGCCAATCTGTGTCTAATAATGATGTAAACGACGAAGAAGATGATGTTTCCAAAGAAGTGCAAGCTACTGGATCTCCTCATTCTGCGGGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTCTCATCCAATTTGCCAGCTATGCACGGTGAAAGTCTGACACAGTCGACACAACTTGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCCTATCAGGATCCATATTATGGGGGAATGATGGCTTTCTATGGTCATCAGCCCGTGGGCTATCCTATGGTCGGAGCGCCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTCGTGAATGCAAAGCAATACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCCGAGGCTGAAAAGAAGTTGATAAAAGCTAGAAAGCCATACCTTCACGAGTCTAGACACCAGCATGCCATAAGAAGGTCGAGGAGCAGTGGAGGGCGTTTTGCGAAGAAAAATGAAGCTGATGGAAAGGAGAGTTCTGAACAGCAGCACGGAAGCTCCTTGACAATCAAGGCCTCTGAGTAG 837 46.0 MFSRIDPNNILYVARIPSGFEGMQSKSETNNQLQSDPNGAPSTTIYYEPWCSSMGYSPFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDAQKMQHVSSNLPAMHGESLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPVGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRSRSSGGRFAKKNEADGKESSEQQHGSSLTIKASE 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4904211 4909953 - CmoCh10G009720.1 Cmo10g00972 390318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00972 278 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 198 252 IPR001289 GO:0003700|GO:0006355
Cmo10g00972 278 ProSitePatterns NF-YA/HAP2 subunit signature. 200 220 IPR018362 GO:0003677|GO:0016602
Cmo10g00972 278 PRINTS CCAAT-binding transcription factor subunit B signature 229 252 IPR001289 GO:0003700|GO:0006355
Cmo10g00972 278 PRINTS CCAAT-binding transcription factor subunit B signature 198 220 IPR001289 GO:0003700|GO:0006355
Cmo10g00972 278 MobiDBLite consensus disorder prediction 230 249 - -
Cmo10g00972 278 MobiDBLite consensus disorder prediction 250 264 - -
Cmo10g00972 278 MobiDBLite consensus disorder prediction 106 126 - -
Cmo10g00972 278 MobiDBLite consensus disorder prediction 227 278 - -
Cmo10g00972 278 MobiDBLite consensus disorder prediction 67 91 - -
Cmo10g00972 278 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 55 271 IPR001289 GO:0003700|GO:0006355
Cmo10g00972 278 Gene3D - 195 257 - -
Cmo10g00972 278 ProSiteProfiles NF-YA/HAP2 family profile. 195 255 IPR001289 GO:0003700|GO:0006355
Cmo10g00972 278 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 55 271 - -
Cmo10g00972 278 MobiDBLite consensus disorder prediction 67 126 - -
Cmo10g00972 278 SMART cbf3 194 255 IPR001289 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01293 Cmo10g00972 CCT
Cmo10g00972 Cmo20g00092 CCT
Cmo10g00972 Cmo20g00092 ECH
Cmo02g01293 Cmo10g00972 ECH
Cmo10g00972 Cmo11g00859 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00078 Cmo-Chr3:1202013 Cmo10g00972 Cmo-Chr10:4904211 1.34E-30 dispersed
Cmo12g01348 Cmo-Chr12:11650429 Cmo10g00972 Cmo-Chr10:4904211 1.73E-28 dispersed
Cmo10g00972 Cmo-Chr10:4904211 Cmo11g00859 Cmo-Chr11:4378215 2.79E-160 wgd
Cmo10g00972 Cmo-Chr10:4904211 Cmo17g00931 Cmo-Chr17:8289609 3.14E-45 wgd
Cmo10g00972 Cmo-Chr10:4904211 Cmo02g01293 Cmo-Chr2:7695004 8.92E-98 wgd
Cmo10g00972 Cmo-Chr10:4904211 Cmo20g00092 Cmo-Chr20:465885 3.71E-92 wgd
Cmo10g00972 Cmo-Chr10:4904211 Cmo08g00517 Cmo-Chr8:3225088 9.88E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10486 PF02045 CBFB_NFYA 1.80E-25 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00972 K08064 - csv:101212860 429.869