Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00972 ATGTTTAGTCGAATTGACCCAAATAATATTTTGTACGTTGCTCGAATTCCTTCCGGGTTTGAAGGTATGCAGTCAAAGTCAGAAACCAATAATCAGCTCCAATCTGATCCAAATGGTGCTCCATCCACGACTATCTATTACGAACCCTGGTGCAGTTCTATGGGGTACAGTCCTTTTCCGTTACCTGTGGTTGGGGGAAATGCTTCCAGTTCGACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGCCAATCTGTGTCTAATAATGATGTAAACGACGAAGAAGATGATGTTTCCAAAGAAGTGCAAGCTACTGGATCTCCTCATTCTGCGGGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTCTCATCCAATTTGCCAGCTATGCACGGTGAAAGTCTGACACAGTCGACACAACTTGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCCTATCAGGATCCATATTATGGGGGAATGATGGCTTTCTATGGTCATCAGCCCGTGGGCTATCCTATGGTCGGAGCGCCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTCGTGAATGCAAAGCAATACCAAGGAATTTTGAGGCGAAGGCAAGCACGTGCAAAAGCCGAGGCTGAAAAGAAGTTGATAAAAGCTAGAAAGCCATACCTTCACGAGTCTAGACACCAGCATGCCATAAGAAGGTCGAGGAGCAGTGGAGGGCGTTTTGCGAAGAAAAATGAAGCTGATGGAAAGGAGAGTTCTGAACAGCAGCACGGAAGCTCCTTGACAATCAAGGCCTCTGAGTAG 837 46.0 MFSRIDPNNILYVARIPSGFEGMQSKSETNNQLQSDPNGAPSTTIYYEPWCSSMGYSPFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDAQKMQHVSSNLPAMHGESLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPVGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRSRSSGGRFAKKNEADGKESSEQQHGSSLTIKASE 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4904211 4909953 - CmoCh10G009720.1 Cmo10g00972 390318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00972 278 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 198 252 IPR001289 GO:0003700|GO:0006355
Cmo10g00972 278 ProSitePatterns NF-YA/HAP2 subunit signature. 200 220 IPR018362 GO:0003677|GO:0016602
Cmo10g00972 278 PRINTS CCAAT-binding transcription factor subunit B signature 229 252 IPR001289 GO:0003700|GO:0006355
Cmo10g00972 278 PRINTS CCAAT-binding transcription factor subunit B signature 198 220 IPR001289 GO:0003700|GO:0006355
Cmo10g00972 278 MobiDBLite consensus disorder prediction 230 249 - -
Cmo10g00972 278 MobiDBLite consensus disorder prediction 250 264 - -
Cmo10g00972 278 MobiDBLite consensus disorder prediction 106 126 - -
Cmo10g00972 278 MobiDBLite consensus disorder prediction 227 278 - -
Cmo10g00972 278 MobiDBLite consensus disorder prediction 67 91 - -
Cmo10g00972 278 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 55 271 IPR001289 GO:0003700|GO:0006355
Cmo10g00972 278 Gene3D - 195 257 - -
Cmo10g00972 278 ProSiteProfiles NF-YA/HAP2 family profile. 195 255 IPR001289 GO:0003700|GO:0006355
Cmo10g00972 278 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 55 271 - -
Cmo10g00972 278 MobiDBLite consensus disorder prediction 67 126 - -
Cmo10g00972 278 SMART cbf3 194 255 IPR001289 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00972 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - csv:101212860 429.869
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01293 Cmo10g00972 CCT
Cmo10g00972 Cmo20g00092 CCT
Cmo10g00972 Cmo20g00092 ECH
Cmo02g01293 Cmo10g00972 ECH
Cmo10g00972 Cmo11g00859 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00078 Cmo-Chr3:1202013 Cmo10g00972 Cmo-Chr10:4904211 1.34E-30 dispersed
Cmo12g01348 Cmo-Chr12:11650429 Cmo10g00972 Cmo-Chr10:4904211 1.73E-28 dispersed
Cmo10g00972 Cmo-Chr10:4904211 Cmo11g00859 Cmo-Chr11:4378215 2.79E-160 wgd
Cmo10g00972 Cmo-Chr10:4904211 Cmo17g00931 Cmo-Chr17:8289609 3.14E-45 wgd
Cmo10g00972 Cmo-Chr10:4904211 Cmo02g01293 Cmo-Chr2:7695004 8.92E-98 wgd
Cmo10g00972 Cmo-Chr10:4904211 Cmo20g00092 Cmo-Chr20:465885 3.71E-92 wgd
Cmo10g00972 Cmo-Chr10:4904211 Cmo08g00517 Cmo-Chr8:3225088 9.88E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g216 Blo03g00980 Blo03g01379 . . Bpe01g00318 Bpe08g01208 Bma14g00770 Bma07g01396 Cmo10g00972 Cmo11g00859 Cma10g00928 . . . Sed08g1078 Cpe05g00493 Cpe18g00169 Bhi02g01538 Tan09g0832 Cmetu02g0337 . Hepe09g1122 . . Cla02g02245 Cam02g2393 Cec02g2427 Cco02g2469 Clacu02g2363 Cmu02g2297 Cre02g2617 . Cone5ag1448 Cone18ag0101 Cone11ag1494 Lsi06g00527 Csa06g02549 Chy05g00137 Cme05g00165 Blo08g00103 Blo14g00284 . Bda09g00320 Bpe08g00276 Bpe11g00922 Bma07g00265 Bma11g00292 . Cmo02g01293 Cmo20g00092 Cma11g00848 Cma20g00089 Car02g01043 Car20g00071 Cpe16g00877 Cpe04g00917 Bhi10g00303 . . . . . . Cla03g01271 Cam03g1337 Cec03g1373 Cco03g1365 Clacu03g1359 Cmu03g1930 Cre03g1600 . . Chy02g01451 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo20g00092 CCT,CST,ECH 1 272 CCAAT-HAP2 Transcription Factor Family AT5G12840 50.7 9.4e-56 214.5
Cmo02g01293 CCT,CST,ECH 18 269 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.9 3.6e-55 212.6
Cmo02g01293 CCT,CST,ECH 105 340 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.7 2.3e-50 196.8
Cmo11g00859 CCT,CST,ECH 1 239 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.6 5.7e-46 182.2
Cmo10g00972 CCT,CST,ECH 19 255 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.7 5.7e-46 182.2
Cmo07g00064 . 62 173 CCAAT-HAP2 Transcription Factor Family AT2G34720 71.4 1.8e-38 156.4
Cmo07g00064 . 1 175 CCAAT-HAP2 Transcription Factor Family AT1G30500 61.1 1.4e-50 196.8
Cmo03g01443 . 63 200 CCAAT-HAP2 Transcription Factor Family AT1G30500 62.3 9.5e-39 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001124 3 6 3 3 3 2 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 1 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10486 PF02045 CBFB_NFYA 1.80E-25 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00972 Cmo_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0