Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g01025 ATGTTCGGGATGACAGTAGAGGCGACGACCGTGACAACAGTGGCGGTGGTAGTCACGATGGCGGGGTGGTTGCTCGGTGGAGTTGAGGGTAGAGAACCAGTGTTGCATAGAGTTGGAGGAGGAAAATACACTTGGACAACTAATGTTAACTTCACTGATTGGTCAATTCACGAGCACTTTTACGTTGGTGATTGGCTCTATTTCGGGTTCGATAAACGTATCTACAACGTGCTACAAGTAAACAAAACGAGCTACGACAGTTGCAACGAGAATGATTTCGTTTTCAACGTGACGAGAGGGGGACGAGACGTGTTCAATCTAACACAAGCAAAGCCATACTACTTTCTAAGTGGAAGAGGGTTTTGTTTTCAAGGAATGAAGGTTGCTATCTTTGTTGAAGACTCGCCTCCCATTTCATCACCCAAAATTTCAAACCATTCTTCATCTATTCAACCATTAAAGCCTCTCTCATCCCTCTCGGTATTGATCACGCTTGCCTTCACTAAAATCGTTCTTCTAAATTAG 525 44.19 MFGMTVEATTVTTVAVVVTMAGWLLGGVEGREPVLHRVGGGKYTWTTNVNFTDWSIHEHFYVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRGFCFQGMKVAIFVEDSPPISSPKISNHSSSIQPLKPLSSLSVLITLAFTKIVLLN 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5380423 5381059 - CmoCh10G010250.1 Cmo10g01025 390371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g01025 174 PANTHER BLUE COPPER PROTEIN 13 149 IPR039391 GO:0009055
Cmo10g01025 174 Gene3D - 35 141 IPR008972 -
Cmo10g01025 174 Pfam Plastocyanin-like domain 45 126 IPR003245 GO:0009055
Cmo10g01025 174 ProSiteProfiles Phytocyanin domain profile. 34 134 IPR003245 GO:0009055
Cmo10g01025 174 PANTHER EARLY NODULIN-LIKE PROTEIN 20 13 149 - -
Cmo10g01025 174 SUPERFAMILY Cupredoxins 35 132 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g01025 - - - cmos:111461613 332.028
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01025 Cmo-Chr10:5380423 Cmo11g01202 Cmo-Chr11:7081768 9.41E-46 dispersed
Cmo10g01025 Cmo-Chr10:5380423 Cmo15g01241 Cmo-Chr15:8537369 9.76E-12 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo18g00026 . 12 146 Phytocyanin Superfamily AT1G48940 55.5 2.0e-38 156.4
Cmo11g01201 . 24 166 Phytocyanin Superfamily AT3G01070 54.4 6.4e-39 157.9
Cmo14g00570 CST 19 178 Phytocyanin Superfamily AT3G01070 51.5 1.3e-36 150.2
Cmo05g00351 CST 7 171 Phytocyanin Superfamily AT2G25060 53.3 1.0e-42 170.6
Cmo14g00570 CST 26 185 Phytocyanin Superfamily AT5G15350 50.9 4.0e-44 175.3
Cmo11g01201 . 28 162 Phytocyanin Superfamily AT5G15350 55.5 5.8e-43 171.4
Cmo05g00351 CST 16 171 Phytocyanin Superfamily AT4G31840 54.5 8.3e-45 177.6
Cmo18g00026 . 12 146 Phytocyanin Superfamily AT1G48940 55.5 2.0e-38 156.4
Cmo12g00319 CST 21 165 Phytocyanin Superfamily AT5G25090 57.7 3.5e-38 155.6
Cmo05g00351 CST 7 171 Phytocyanin Superfamily AT2G25060 53.3 1.0e-42 170.6
Cmo05g00351 CST 16 171 Phytocyanin Superfamily AT4G31840 54.5 8.3e-45 177.6
Cmo11g01201 . 24 166 Phytocyanin Superfamily AT3G01070 54.4 6.4e-39 157.9
Cmo14g00570 CST 19 178 Phytocyanin Superfamily AT3G01070 51.5 1.3e-36 150.2
Cmo14g00570 CST 26 185 Phytocyanin Superfamily AT5G15350 50.9 4.0e-44 175.3
Cmo11g01201 . 28 162 Phytocyanin Superfamily AT5G15350 55.5 5.8e-43 171.4
Cmo20g00135 . 19 229 Phytocyanin Superfamily AT1G08500 59.4 3.0e-63 239.2
Cmo10g01025 . 32 173 Phytocyanin Superfamily AT2G27035 54.2 4.6e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003401 0 1 0 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 1 2 1 1 1 2 2 3 3 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g01025 Cmo_Chr10 FPKM 4.985043 5.230083 6.42473 6.616859 7.894518 8.983141 9.010945 8.454088 7.076895 8.243401