Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g01026 ATGATGATGATGTTCAATGAGATGGGATTTTGTGACGATATGGATTTCCTTTCGGCTCCGATTGTGGATGGAGATGTCGTAGCTCGACCAGCTGATCCTGAAGTTGTGGTGGAAGATGATTATTCTGATGAAGAGATTGATGTCGATGAGCTTGAGAGGAGGATGTGGAGGGACAAGATGCGTCTCAAACGTCTTAAAGAGCAAAGTAAGGTAAAGGAAGGGATCGATATCGCGAAGCAGCGACAGTCTCAAGACCAGGCTAGGAGGAAGAAGATGTCAAGGGCTCATGATGGGATCTTGAAATACATGTTGAAGATTATGGAAGTTTGTAATGCTCAAGGCTTTGTATATGGAATAATTCCAGAGAAGGGAAAGCCAGTAACCGGGGCATCGGATAATCTGCGTGAATGGTGGAAAGACAAGGTTAGATTTGATAGAAACGGACCGGCTGCCATAGCTAAGTACCAGGCAGACAATGCGATTCCCGGACGAAACGATGGGTGTAATTCGATCGGTCCAACCCCGCATACCTTGCAGGAACTTCAGGATACGACCCTTGGATCTCTCTTATCAGCTTTGATGCAGCACTGTGACCCTCCTCAAAGAAGATTTCCATTGGAGAAGGGCGTTCCTCCACCGTGGTGGCCTACTGGAATCGAGGAATGGTGGCCTCAGCTCGGGTTGTCGAAGGACCAAGGTCCTCCACCTTACAAGAAGCCCCATGACTTGAAAAAAGCGTGGAAAGTTGGTGTTTTGACTGCTGTCATCAAGCATATGTCCCCTGATATCGCCAAGATCCGAAAACTTGTTAGACAGTCGAAGTGTTTGCAGGACAAGATGACTGCCAAGGAGAGTGCTACATGGCTTGCTATTATCAACCAGGAGGAGGTCTTGGCTCGGGAGCTTTATCCCAATTCTTGCCCGCCTTTGTCTTCCGGTGGGGGTAGTGGATCGTTGGTCATTAATGATTGCAGCGAATACGATGTAGAAGGCGCTGAGGAGGAACCGAGCTTTGATGTTCAAGATCGTAAACCTGATAACCATAGCTCATTCAACTTGGGAATGGAGAGAACGAGAGAACGGGTGCCCCTTCGACAACCACCGTATGCAATCAAAGGAGAGGTTTCTACAAACTTAGATTTTATGCGAAAGAGGAAACCGACCAGCGATCTGAACATGATGATGGATCAGAAGATCTATACTTGTGAGTTCCTCCAGTGTCCTTATAGCGAGCTTCGTCTCGGGTTCAACGACAGGACGTCTAGAGACAATCATCAGTTGTCCTGTCCATATAGAACTTCTTCAGAATTCAATGGCTCAAGTTTTCATGTCAATGAGGTTAAACCAGTTATCTTCCCTCAGTCATTCGCCCCGCCCAAGTCAGCTCCACCCCCAGTTAGCTCGGTTCCATCGTCCTTCGACCTGTCCACTTTAGGCGTTCCAGAAGACGACCAAAAGATGATCAGGGAGCTCATGTCGATCTACGACACCAACATCCAAGGAAACAAAAGCAACATAAACACCGTTAACAGCGCTATCACAGAGAACCAAAATCTTCCTCAGTTAAAGATCCAACCTCAACAAGACGAATACTTTCGCAATCAAGGTATAATGATGGACGGAAACTTCTTCGAGGGATCGAACGTTTCTAGCAGCCAATTCAACCAGTTTAAGCCAATCAATTCACCTTTCGAAAACAACCACCACGAGCACAACAATAACAACAACAACAACAACAACTTCCACATGATGTTTGGCTCTCCATTCGATTTGTCGACCTTCGACTACAAAGAAGAAGTACCCGGTGCAGCAGCCATCGATACACTGTCAAAACAGCAGGATATTCCATTATGGTATCATTGA 1863 46.48 MMMMFNEMGFCDDMDFLSAPIVDGDVVARPADPEVVVEDDYSDEEIDVDELERRMWRDKMRLKRLKEQSKVKEGIDIAKQRQSQDQARRKKMSRAHDGILKYMLKIMEVCNAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGRNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGIEEWWPQLGLSKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEVLARELYPNSCPPLSSGGGSGSLVINDCSEYDVEGAEEEPSFDVQDRKPDNHSSFNLGMERTRERVPLRQPPYAIKGEVSTNLDFMRKRKPTSDLNMMMDQKIYTCEFLQCPYSELRLGFNDRTSRDNHQLSCPYRTSSEFNGSSFHVNEVKPVIFPQSFAPPKSAPPPVSSVPSSFDLSTLGVPEDDQKMIRELMSIYDTNIQGNKSNINTVNSAITENQNLPQLKIQPQQDEYFRNQGIMMDGNFFEGSNVSSSQFNQFKPINSPFENNHHEHNNNNNNNNNFHMMFGSPFDLSTFDYKEEVPGAAAIDTLSKQQDIPLWYH 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5388347 5390209 + CmoCh10G010260.1 Cmo10g01026 390372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g01026 620 Pfam Ethylene insensitive 3 49 296 IPR006957 GO:0005634
Cmo10g01026 620 Gene3D - 81 158 IPR023278 GO:0003700|GO:0005634
Cmo10g01026 620 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 2 619 - -
Cmo10g01026 620 SUPERFAMILY DNA-binding domain of EIN3-like 175 299 IPR023278 GO:0003700|GO:0005634
Cmo10g01026 620 Coils Coil 48 68 - -
Cmo10g01026 620 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 2 619 IPR006957 GO:0005634
Cmo10g01026 620 Gene3D - 173 306 IPR023278 GO:0003700|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00869 Cmo-Chr4:4343817 Cmo10g01026 Cmo-Chr10:5388347 8.53E-110 dispersed
Cmo04g02607 Cmo-Chr4:19007185 Cmo10g01026 Cmo-Chr10:5388347 0 dispersed
Cmo10g01026 Cmo-Chr10:5388347 Cmo15g00557 Cmo-Chr15:2663581 0 dispersed
Cmo10g01026 Cmo-Chr10:5388347 Cmo11g00819 Cmo-Chr11:4064782 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10490 PF04873 EIN3 4.50E-129 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g01026 K14514 - csv:101206055 1099.35