Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g01075 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGGAAAAACCAGTGGGCTCGAATCTCGTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGTAAGGCTCGCTGGTATGAGTGGCTTGACCCTTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGCCTTGAGCGCTATGAGAAACTTCTTGATGCTGCTTGTGTTAAGGATGAGAATTACGAACCAGGAGATGACCCACGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCAGATCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGATTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCTAGGAGGCTTGCTTCGCTTCAAAAAAGGAGGGAGCTAAAAGCTGCTGGGATTGATACTCGACATCGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTCGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGGGGAAGATAGACCAGTGGAACAGCCCAAATTTCCAGCAACAATTGAAGAGCTTGAAGGCAAAAGAAGGATTGATGTAGAAGCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTTAGGAAAAGATCTAAACTTATGCTTCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCTGGTGATCTTCTTGCTGGTAGTGAAGAGCTTGCCGAAGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCCCAGACATCACGACAAGGAATGACACCTTTTCGAACTCCGCAGAGGACGCCGGCTGGGAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCAGAGCTGCATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCGATGCTCACACCCTCAGCAACTCCTGGTGGTGTTGGTCTTACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCGTTTGGTATGACTCCAAAAGGAACACCTATTAGAGATGAGTTACATATCAATGAAGATATGGATGCACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGGAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCAGAGGAGACGATTGAAGAGGATATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTGCTTCGGAAAAGATCTAAAGTGCTACAGAGGGAGCTTCCTCGGCCTCCTACTGCTTCCTTGGAACTTATTAGAAATTCCTTGATCGCTGATGGAGACAAGAGTTCATTTGTACCACCTACCCCTATTGAGCAGGCTGATGAAATGGTAAGAAAGGAACTTCTTGCTTTGCTAGAGCATGATAATGCGAAGTACCCGATCGATGAAAAGGTCAACAAGGAGAAGAAGAAAGGTTCCAAGCGCTCTGGAAATAGACCTACTGCAGCCATCCCCACAATAGATGATTTTGAAGTAACTGAGATGGAAGAGGCTGATTATTTGATAAATGAAGAGGCCCGGTATTTGTGTGTTGCAATGGGGCATGAAAAAGAATCCTTAGATGAGTTTGTGGAAGCGCACAAAACCTGCTTGAATGACCTTATGTACTTCCCCACTAGAAATGCTTATGGACTTTCCAGTGTTGCTGGAAACCACGAGAAACTAGCCGCCTTGCAGGATGAGTTTGAGTATGTTAAAATGAAAATGGATGACGATACTGAGAAGGCTGTCCGGTTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGTCAAAACAAAGCCTTTGGCCACAAATTGAGGCAACGTTCAAGCAGATAGACACTGCAGCAACAGAGCTGGAGTGCTTTGTGGCTCTTCAAAAGCAAGAGATGTCAGCTGCTTCGCACAGGATTAGTGGTATCTCAGAGGAGGTTCAGAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTACGTTATGGTAATCTTTTGGCGGACTTGGAAAAGATCCAGAAAATCATGGATGATCGCAAGGCACTGGCACAAAAGGAGGAAGAAATCGCAGCGGAGAGTCGCGCTCTTCAGTTGGCGGAGGCTGAGGCTAATCAATCGGTTGGAGAAAAAGCTGATAATAGTTATGAATCCATGTCTGCATCAGCAACAGTCAATTGTGAAAACTCTATGCCCGTTACCTCAGCCCCCAATGAATTAACGGGCGAGCAACTGAACTTGTCCGTGAGACATGAACATGGCACATCTAATGCCATGGATATCGACGCAGAGAAAGAAAGTGCAGCGGTGAGCTCAGATATTGGCTTAACTGATGACAAACTACCTTCTGCAGTGGAAGAGAATGCATCACTGCCTGACAATGGCTTTGAAGATTCTGATAAAAGTCGAACCATTGATGCTCCTTCTCAAGAACTCTTGGGCCCTCATGCAAATGGCTCTCCAGACTCCATTACCGTGGAAAATAAGATCAGCAATGATTCAGTTGATCGAGAAGCTATTCAAAATGTTGAGTGTAGTACCAATAATGTGGAGGAAGTCGAAGATGTTGAAACTCAGCAGCTTAACACTGAAGCTGAAAACTCAGAGTTTCATTTGACTAATCTTGATTCTTCTGCTGCACCTGCATCTTCTAATGAGGATGGCCCTCGTAACGAAGGGGAAGCAACGGAATAG 3078 44.83 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRHRKRKRKGIDYNAEIPFEKRPPPGFFDVSGEDRPVEQPKFPATIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYAGDLLAGSEELAEGSGATRALLANYAQTSRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELHINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEETIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLIADGDKSSFVPPTPIEQADEMVRKELLALLEHDNAKYPIDEKVNKEKKKGSKRSGNRPTAAIPTIDDFEVTEMEEADYLINEEARYLCVAMGHEKESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKMKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQIDTAATELECFVALQKQEMSAASHRISGISEEVQKQKELERTLQLRYGNLLADLEKIQKIMDDRKALAQKEEEIAAESRALQLAEAEANQSVGEKADNSYESMSASATVNCENSMPVTSAPNELTGEQLNLSVRHEHGTSNAMDIDAEKESAAVSSDIGLTDDKLPSAVEENASLPDNGFEDSDKSRTIDAPSQELLGPHANGSPDSITVENKISNDSVDREAIQNVECSTNNVEEVEDVETQQLNTEAENSEFHLTNLDSSAAPASSNEDGPRNEGEATE 1025
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5795404 5808034 - CmoCh10G010750.1 Cmo10g01075 390421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g01075 1025 MobiDBLite consensus disorder prediction 157 176 - -
Cmo10g01075 1025 MobiDBLite consensus disorder prediction 949 965 - -
Cmo10g01075 1025 MobiDBLite consensus disorder prediction 598 618 - -
Cmo10g01075 1025 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cmo10g01075 1025 Coils Coil 167 187 - -
Cmo10g01075 1025 SMART sant 6 55 IPR001005 -
Cmo10g01075 1025 SMART sant 58 105 IPR001005 -
Cmo10g01075 1025 MobiDBLite consensus disorder prediction 113 150 - -
Cmo10g01075 1025 MobiDBLite consensus disorder prediction 987 1013 - -
Cmo10g01075 1025 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 910 - -
Cmo10g01075 1025 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cmo10g01075 1025 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cmo10g01075 1025 MobiDBLite consensus disorder prediction 914 965 - -
Cmo10g01075 1025 MobiDBLite consensus disorder prediction 400 414 - -
Cmo10g01075 1025 CDD SANT 10 53 IPR001005 -
Cmo10g01075 1025 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Cmo10g01075 1025 CDD SANT_CDC5_II 55 106 - -
Cmo10g01075 1025 Pfam pre-mRNA splicing factor component 407 657 IPR021786 -
Cmo10g01075 1025 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cmo10g01075 1025 MobiDBLite consensus disorder prediction 382 421 - -
Cmo10g01075 1025 Gene3D - 60 114 - -
Cmo10g01075 1025 Gene3D - 5 59 - -
Cmo10g01075 1025 PANTHER - 1 910 - -
Cmo10g01075 1025 Pfam Myb-like DNA-binding domain 10 70 - -
Cmo10g01075 1025 Coils Coil 811 831 - -
Cmo10g01075 1025 MobiDBLite consensus disorder prediction 987 1025 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g01075 K12860 CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1 - csv:101206265 1683.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01075 Cmo-Chr10:5795404 Cmo05g00628 Cmo-Chr5:3159771 8.20E-11 dispersed
Cmo11g00994 Cmo-Chr11:5321023 Cmo10g01075 Cmo-Chr10:5795404 0 transposed
Cmo10g01075 Cmo-Chr10:5795404 Cmo11g00993 Cmo-Chr11:5315981 3.67E-120 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo10g01075 . 1 851 MYB-Related Transcription Factor Family AT1G09770 75.9 0.0e+00 1188.3
Cmo11g00994 . 1 728 MYB-Related Transcription Factor Family AT1G09770 81.9 0.0e+00 1144.0
Cmo10g00344 CST 165 630 MYB-Related Transcription Factor Family AT3G18100 55.3 6.9e-148 521.9
Cmo10g00344 CST 165 630 MYB-Related Transcription Factor Family AT3G18100 55.3 6.9e-148 521.9
Cmo10g01075 . 1 851 MYB-Related Transcription Factor Family AT1G09770 75.9 0.0e+00 1188.3
Cmo11g00994 . 1 728 MYB-Related Transcription Factor Family AT1G09770 81.9 0.0e+00 1144.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10494 PF11831 Myb_Cef 1.00E-57 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g01075 Cmo_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0