Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g01075 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGGAAAAACCAGTGGGCTCGAATCTCGTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGTAAGGCTCGCTGGTATGAGTGGCTTGACCCTTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGCCTTGAGCGCTATGAGAAACTTCTTGATGCTGCTTGTGTTAAGGATGAGAATTACGAACCAGGAGATGACCCACGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCAGATCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGATTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCTAGGAGGCTTGCTTCGCTTCAAAAAAGGAGGGAGCTAAAAGCTGCTGGGATTGATACTCGACATCGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTCGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGGGGAAGATAGACCAGTGGAACAGCCCAAATTTCCAGCAACAATTGAAGAGCTTGAAGGCAAAAGAAGGATTGATGTAGAAGCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTTAGGAAAAGATCTAAACTTATGCTTCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCTGGTGATCTTCTTGCTGGTAGTGAAGAGCTTGCCGAAGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCCCAGACATCACGACAAGGAATGACACCTTTTCGAACTCCGCAGAGGACGCCGGCTGGGAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCAGAGCTGCATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCGATGCTCACACCCTCAGCAACTCCTGGTGGTGTTGGTCTTACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCGTTTGGTATGACTCCAAAAGGAACACCTATTAGAGATGAGTTACATATCAATGAAGATATGGATGCACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGGAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCAGAGGAGACGATTGAAGAGGATATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTGCTTCGGAAAAGATCTAAAGTGCTACAGAGGGAGCTTCCTCGGCCTCCTACTGCTTCCTTGGAACTTATTAGAAATTCCTTGATCGCTGATGGAGACAAGAGTTCATTTGTACCACCTACCCCTATTGAGCAGGCTGATGAAATGGTAAGAAAGGAACTTCTTGCTTTGCTAGAGCATGATAATGCGAAGTACCCGATCGATGAAAAGGTCAACAAGGAGAAGAAGAAAGGTTCCAAGCGCTCTGGAAATAGACCTACTGCAGCCATCCCCACAATAGATGATTTTGAAGTAACTGAGATGGAAGAGGCTGATTATTTGATAAATGAAGAGGCCCGGTATTTGTGTGTTGCAATGGGGCATGAAAAAGAATCCTTAGATGAGTTTGTGGAAGCGCACAAAACCTGCTTGAATGACCTTATGTACTTCCCCACTAGAAATGCTTATGGACTTTCCAGTGTTGCTGGAAACCACGAGAAACTAGCCGCCTTGCAGGATGAGTTTGAGTATGTTAAAATGAAAATGGATGACGATACTGAGAAGGCTGTCCGGTTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGTCAAAACAAAGCCTTTGGCCACAAATTGAGGCAACGTTCAAGCAGATAGACACTGCAGCAACAGAGCTGGAGTGCTTTGTGGCTCTTCAAAAGCAAGAGATGTCAGCTGCTTCGCACAGGATTAGTGGTATCTCAGAGGAGGTTCAGAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTACGTTATGGTAATCTTTTGGCGGACTTGGAAAAGATCCAGAAAATCATGGATGATCGCAAGGCACTGGCACAAAAGGAGGAAGAAATCGCAGCGGAGAGTCGCGCTCTTCAGTTGGCGGAGGCTGAGGCTAATCAATCGGTTGGAGAAAAAGCTGATAATAGTTATGAATCCATGTCTGCATCAGCAACAGTCAATTGTGAAAACTCTATGCCCGTTACCTCAGCCCCCAATGAATTAACGGGCGAGCAACTGAACTTGTCCGTGAGACATGAACATGGCACATCTAATGCCATGGATATCGACGCAGAGAAAGAAAGTGCAGCGGTGAGCTCAGATATTGGCTTAACTGATGACAAACTACCTTCTGCAGTGGAAGAGAATGCATCACTGCCTGACAATGGCTTTGAAGATTCTGATAAAAGTCGAACCATTGATGCTCCTTCTCAAGAACTCTTGGGCCCTCATGCAAATGGCTCTCCAGACTCCATTACCGTGGAAAATAAGATCAGCAATGATTCAGTTGATCGAGAAGCTATTCAAAATGTTGAGTGTAGTACCAATAATGTGGAGGAAGTCGAAGATGTTGAAACTCAGCAGCTTAACACTGAAGCTGAAAACTCAGAGTTTCATTTGACTAATCTTGATTCTTCTGCTGCACCTGCATCTTCTAATGAGGATGGCCCTCGTAACGAAGGGGAAGCAACGGAATAG 3078 44.83 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRHRKRKRKGIDYNAEIPFEKRPPPGFFDVSGEDRPVEQPKFPATIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYAGDLLAGSEELAEGSGATRALLANYAQTSRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELHINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEETIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLIADGDKSSFVPPTPIEQADEMVRKELLALLEHDNAKYPIDEKVNKEKKKGSKRSGNRPTAAIPTIDDFEVTEMEEADYLINEEARYLCVAMGHEKESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKMKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQIDTAATELECFVALQKQEMSAASHRISGISEEVQKQKELERTLQLRYGNLLADLEKIQKIMDDRKALAQKEEEIAAESRALQLAEAEANQSVGEKADNSYESMSASATVNCENSMPVTSAPNELTGEQLNLSVRHEHGTSNAMDIDAEKESAAVSSDIGLTDDKLPSAVEENASLPDNGFEDSDKSRTIDAPSQELLGPHANGSPDSITVENKISNDSVDREAIQNVECSTNNVEEVEDVETQQLNTEAENSEFHLTNLDSSAAPASSNEDGPRNEGEATE 1025
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5795404 5808034 - CmoCh10G010750.1 Cmo10g01075 390421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g01075 1025 MobiDBLite consensus disorder prediction 157 176 - -
Cmo10g01075 1025 MobiDBLite consensus disorder prediction 949 965 - -
Cmo10g01075 1025 MobiDBLite consensus disorder prediction 598 618 - -
Cmo10g01075 1025 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cmo10g01075 1025 Coils Coil 167 187 - -
Cmo10g01075 1025 SMART sant 6 55 IPR001005 -
Cmo10g01075 1025 SMART sant 58 105 IPR001005 -
Cmo10g01075 1025 MobiDBLite consensus disorder prediction 113 150 - -
Cmo10g01075 1025 MobiDBLite consensus disorder prediction 987 1013 - -
Cmo10g01075 1025 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 910 - -
Cmo10g01075 1025 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cmo10g01075 1025 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cmo10g01075 1025 MobiDBLite consensus disorder prediction 914 965 - -
Cmo10g01075 1025 MobiDBLite consensus disorder prediction 400 414 - -
Cmo10g01075 1025 CDD SANT 10 53 IPR001005 -
Cmo10g01075 1025 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Cmo10g01075 1025 CDD SANT_CDC5_II 55 106 - -
Cmo10g01075 1025 Pfam pre-mRNA splicing factor component 407 657 IPR021786 -
Cmo10g01075 1025 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cmo10g01075 1025 MobiDBLite consensus disorder prediction 382 421 - -
Cmo10g01075 1025 Gene3D - 60 114 - -
Cmo10g01075 1025 Gene3D - 5 59 - -
Cmo10g01075 1025 PANTHER - 1 910 - -
Cmo10g01075 1025 Pfam Myb-like DNA-binding domain 10 70 - -
Cmo10g01075 1025 Coils Coil 811 831 - -
Cmo10g01075 1025 MobiDBLite consensus disorder prediction 987 1025 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01075 Cmo-Chr10:5795404 Cmo05g00628 Cmo-Chr5:3159771 8.20E-11 dispersed
Cmo11g00994 Cmo-Chr11:5321023 Cmo10g01075 Cmo-Chr10:5795404 0 transposed
Cmo10g01075 Cmo-Chr10:5795404 Cmo11g00993 Cmo-Chr11:5315981 3.67E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10494 PF11831 Myb_Cef 1.00E-57 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g01075 K12860 - csv:101206265 1683.31