Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g01156 ATGGATCAGCACGGGCATGGCCAGTCTCCATCCATGGGAGCGGTAGGCAGCGGAGGTCAGATAGCGTATGGTAGCAGCATGTACCATCCCAGCCAAATGACTGTCGGCCCGACATCTGGATCTCAGTCTACTAGTCAGCCAAGTGGAGCTCAGCTTGCTCAACATCAACTTGCTTATCAGCATATCCACCACCACCAGCAGCAACAGCTTCAACAACAGCTCCAGGCCTTTTGGTCAAATCAATACCAAGAGATTGAGAGAGTAATAGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGACGAAGACGTGCGAATGATATCAGCCGAGGCACCTGTTTTATTCGCTAGAGCATGTGAAATGTTCATCCTAGAATTGACTTTACGGTCATGGAATCATACCGAAGAGAACAAGCGTAGGACACTGCAAAAGAATGACATTGCTGCAGCTATCACAAGAACTGATATCTTCGACTTTCTCGTTGATATCGTGCCAAGGGAGGATCTGAAAGATGAAGCACTCACGTCGATTCCAAGAGGCTCAATAACGGTCGGGCCCCCCGGAGATGCACTTCCTTATTGCTATATGTCGTCTCAGCACGCACCTCAGGTTGGGACACCAGGAATGATTATGGGCAAGCCCGTGATGGACCCAGGTAGTTATGCTCAACAATCACACCCTTACATGCCTCCACAAATGTGGCAGCACGGCCAAGATCGAACCCCGACCCATCAATAG 759 49.28 MDQHGHGQSPSMGAVGSGGQIAYGSSMYHPSQMTVGPTSGSQSTSQPSGAQLAQHQLAYQHIHHHQQQQLQQQLQAFWSNQYQEIERVIDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEALTSIPRGSITVGPPGDALPYCYMSSQHAPQVGTPGMIMGKPVMDPGSYAQQSHPYMPPQMWQHGQDRTPTHQ 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9920448 9921206 + CmoCh10G011560.1 Cmo10g01156 390502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g01156 252 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 247 - -
Cmo10g01156 252 MobiDBLite consensus disorder prediction 228 252 - -
Cmo10g01156 252 Gene3D Histone, subunit A 57 173 IPR009072 GO:0046982
Cmo10g01156 252 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 95 158 IPR003958 -
Cmo10g01156 252 MobiDBLite consensus disorder prediction 232 252 - -
Cmo10g01156 252 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 247 - -
Cmo10g01156 252 MobiDBLite consensus disorder prediction 1 53 - -
Cmo10g01156 252 MobiDBLite consensus disorder prediction 24 53 - -
Cmo10g01156 252 SUPERFAMILY Histone-fold 54 167 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00053 Cmo-Chr10:248351 Cmo10g01156 Cmo-Chr10:9920448 6.29E-67 dispersed
Cmo10g01156 Cmo-Chr10:9920448 Cmo11g01511 Cmo-Chr11:10721143 5.42E-77 dispersed
Cmo10g01156 Cmo-Chr10:9920448 Cmo11g01160 Cmo-Chr11:6703878 4.63E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10497 PF00808 CBFD_NFYB_HMF 2.70E-18 CL0012 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g01156 K08066 - csv:101209664 389.808