Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g01169 ATGACACCCATTTTGAACTATGTTGTGTCCAAATGGCAAGCGTTGTCCACTTCTGATCATGCCTCTGTGGTTTCCATCAACTTATTTGTGGCACTTCTCTGTGCTTGTATTGTGATTGGGCATCTTCTGGAGGAGACTCGATGGATGAATGAGTCGATCACTGCACTCTTGATTGGTATGTTTGCTGGAATAGTCATTTTACTGGTCAGTCGTGGGAAAAGTTCGCATTTGTTGCTTTTCAGCGAAGATACATTCTTTATTTATCTTCTGCCACCGATTATATTCAATGCGGGGTTTCAGGTGAAAAAGAAGCAGTTCTTTGTCAACTTTATGACAATTATGCTGTTTGGTGCAATTGGTACATTAGTCTCGTGTTTCATCATCTCGTTAGGAGCTTTTCAGTTCTTTAAGAAAATGGATGTTGGATCACTGGATATTGCTGATATTTTAGCGATTGGAGCTATATTTGCCGCAACGGATTCTGTATGCACGCTTCAGATATTAAGCCAGGACGAAACCCCTCTACTCTACAGTCTCGTATTTGGGGAGGGCGTGGTCAATGACGCTACGTCTGTGGTGCTTTTCAATGCTATTCAAAGCATAGATCTCAGCAACATTGATGCAAGAGTTGCTATACATTTTCTTGGGAGCTTCTTTTATCTGTTTTCGACGAGCACTCTACTCGGAGTATTTGTTGGGCTGCTGAGTGCTTATATAATCAGAAAGTTATACTTTGGCAGGCACTCGACAGATCGTGAGGTCGCTCTTATGATACTCATGGCGTATCTTTCGTATATGCTGGCTGAATTACTAGATTTGAGTGGCATTCTCACAGTGTTCTTTTGTGGAATTGTAATGTCACATTATACCTGGCATAATGTGACTGAGAGCTCAAGAGTTACCACCAATCCGGGGACATCGGTTGCTGTGAGCGCAATGTTACTCGGCCTGGTTATGGTTGGAAGAGCTGCTTTTGTTTTTCCATTATCGTTTCTATCCAACTTAGCTAAAAAATCAGCAGACGAGAAAATTACGTTCAGGGAACAGGTTATCATTTGGTGGGCTGGTCTCATGAGAGGGGCTGTCTCCATTGCTCTAGCTTATCACCAGTTCACCAGAGCAGGGCACACTCAACTACGAGGGAATGCGATGATGATCACTAGTACCGTAACCGTTGTCCTCTTCAGCACGATGGTGTTTGGATTATTAACCAAGCCTCTTATTAAGTGTTTGATACCCCACCCGAAACTCACGACCAGCATGCTATCGGACCCTGCGACTCCAAAATCATTCTCGGTTCCGCTACTTGGAAGCGCACAAGATTCAGAGCTAGATCTTGACAGCCTCCATGTTCCTCGTCCAACGAGTATACGCGCATTCCTTGCAACTCCTACGCACACTGTGCATCGGTACTGGCGAAAGTTCGACGACGCCTTCATGCGTCCAATGTTTGGGGGTCGGGGTTTTGTTCCTTTTGTCCCAGGATCGCCAACCGAAAGGGGAGGGCATTGA 1512 44.84 MTPILNYVVSKWQALSTSDHASVVSINLFVALLCACIVIGHLLEETRWMNESITALLIGMFAGIVILLVSRGKSSHLLLFSEDTFFIYLLPPIIFNAGFQVKKKQFFVNFMTIMLFGAIGTLVSCFIISLGAFQFFKKMDVGSLDIADILAIGAIFAATDSVCTLQILSQDETPLLYSLVFGEGVVNDATSVVLFNAIQSIDLSNIDARVAIHFLGSFFYLFSTSTLLGVFVGLLSAYIIRKLYFGRHSTDREVALMILMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTNPGTSVAVSAMLLGLVMVGRAAFVFPLSFLSNLAKKSADEKITFREQVIIWWAGLMRGAVSIALAYHQFTRAGHTQLRGNAMMITSTVTVVLFSTMVFGLLTKPLIKCLIPHPKLTTSMLSDPATPKSFSVPLLGSAQDSELDLDSLHVPRPTSIRAFLATPTHTVHRYWRKFDDAFMRPMFGGRGFVPFVPGSPTERGGH 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10438999 10445386 + CmoCh10G011690.1 Cmo10g01169 390515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g01169 503 PANTHER SODIUM/HYDROGEN EXCHANGER 2 303 502 - -
Cmo10g01169 503 PANTHER SODIUM/HYDROGEN EXCHANGER 2 7 302 - -
Cmo10g01169 503 PANTHER SODIUM/HYDROGEN EXCHANGER 303 502 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cmo10g01169 503 PANTHER SODIUM/HYDROGEN EXCHANGER 7 302 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cmo10g01169 503 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cmo10g01169 503 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cmo10g01169 503 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cmo10g01169 503 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cmo10g01169 503 Coils Coil 503 503 - -
Cmo10g01169 503 Gene3D - 145 197 - -
Cmo10g01169 503 Pfam Sodium/hydrogen exchanger family 308 409 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cmo10g01169 503 Pfam Sodium/hydrogen exchanger family 29 297 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01176 Cmo-Chr8:7482903 Cmo10g01169 Cmo-Chr10:10438999 0 dispersed
Cmo10g01169 Cmo-Chr10:10438999 Cmo11g01307 Cmo-Chr11:8965531 0 dispersed
Cmo10g01169 Cmo-Chr10:10438999 Cmo17g01105 Cmo-Chr17:9077906 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g01169 - - csv:101214934 877.856