Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g01196 ATGGGTTGTGTTCTCATGATTATTATCTTCATGTCCATACCTTTTTCAACGCAGAACTCCCACATTTTGATTGCTAACTCACCATTGAATGCAGCAGAGAGCTTCGATGTTGAAGAGTTAGAGAGGGTTTCGGGGGAAGATGAGAGTCGAGGAAATGAGCCTTTCATTCTGGAGAGATTCAGAGCTCTACTTGGACTCAAGAGCTTACCATCGGATCTTTCGTTTTCGCCGTCGCCGTCGCCGTCGCCGTCTCCATCACCGGCAGCCATTGCTCCTTCCCCTGTTCATGTGGCAACTCATCGAGTGCACATTCATGAGCACTCCCACCCTCATCAGCTTCGCTTGCACAAGAGACGACCAGTATACAAACCTAAAAGAGAGGAAGATGCAAGAGAAGGAAGAGTCAGAAAAATTCTTGTTGCAGTTCTTGTGTCTGCAGGAGTCACCATTTTGATATGCTCTATTATTGCCTTTTGGGTCTGCAAGAAGTTCAAAACTCAGAGAGAGGAAGCCACGGAGAAGCTTTCTGTTAAGAGTGAAACAGTAGAGAAGTCAGCTAAACCAAATTCACCAAAATCACCAAAATCTGGCCTTGATCCGTTCGATCTCGGTATGCTTGGAATGGATGCTGAAGAAGAACAGACCCAATGTTCTGTAAGTGAAAAGGAGATATCTGTTCATAAAGAGGGGGAAAGGGGCCAAGAGATGTTAGATTCAGAATTTGATAATGTAAGTGTTTCTTCAACCAAGGAAATGATGTATGTTCATGAGGAAGATGATAGTAAATCAATACAATGCGTATCTGCTAAAGCTGATTCCTCATCTGGGGATAGAATTACTCCTGTTAAATCTTGTTCTTCTGATGATGAGGAATCATTCCATTCTTGTGGTGATTCCAATTTGTCGAATGCTCGCCTTTCAAATGCTTCAGAATCTTCTTCTGCTAATGTGATAACAAAATCTACTTGTTCAGTGCCAACTATGAACTTACCAAGTAAATTGGAAACAACACAATGTGATGATTCTAACAAACCATCAACTTCTGACCAGTCGCATATTACCCTTTCTCCTTGCAATCCAGAAAGCAAAATGCAGATGGTTTCCCTCTCTGTAGGTGGCCAAAAGAATGTCCCATCTATATCTCCGCCTCCGCCACCACCGCCGCCACCGCCGCCAATCACGGATCGCAGCTCTTTTTCCCTCTCTTCACCCTTTTCAACTGGATCTACTTCCTCATCTGCATTGTTAAGATCATCATCTCCAGCAATGTCAGATTCTTCTTCGTTATCTCAAATACCATGGAATGATCTGACATCACCTAATCCTGCTGCTAAACCTTCACTACCATCATCTTCTATCCCTCCACCCCCTTCTCCACCACCAAGTTTGAAAGCAAAGGCTTACTCTTTCAAAACTCCACCACCTCTTCCTTCCAAGCTCCCTCAATTCATGGCATTTGGAAAAGAGGGAAATTCGCGGCCCAAACTTAAGCCTCTCCACTGGGACAAAGTAAGAGCTGCACCAGATCGATCAATGGTTTGGGACAAGCTAAGATGGAGTTCATTTGAGCTAGACGAAGAAATGATTGAGTCACTATTTGGCTACAACCAACATGATTCAATGAAGAATGGTGATGCTAGCAACAAAAGCCCTTCTCCAACCAAGCATATACTAGAGGCAAAGAGACTTCAGAACCTAACCATTCTCTTAAAAGCCCTGAATCTCTCTACAGAACAAGTTTGTGAAGCCATAGAACAAGGGACGGGGATGCGTTTGAGACAACTTGAAGCACTGGTGAAGATGGTACCAACACAGGAAGAAGAGGCCAAATTGTTAAGCTATGAAGGAAACATCGGTGAATTGGGGTTTACAGAAAATTTTGTGATATCAATTCTGAAAATACCATTCGCCTTCCAACGAGTAGAAGCCATGCTTTACAGAGAAACTTTTGAAGATGAAGTGAATCATCTCCGGAATTCGTTTTCCATACTAGAGGAAGCCTGTAAGGAGCTAAAATCGAGCAGGCTCTTCCTGAAACTACTGGAAGCGGTGCTAAAAACAGGGAACCGAATGAACGTCGGAACAAGCAGAGGAGGCGCAAGAGCATTCAAACTAGACGCACTCCTAAAACTATCCGACGTCAAAGGAACCGACGGAAAAACCTCCCTACTCCACTTCGTAGTGCAAGAAATGATCCGATCAGAAGGAATCAGAGTGTCCGGTAGCATAATGGGGAAAATCAGCCAAAAAAACAAATCGAGAACAATAGAAGAAAGAGAGAACGATTACCGAAGAATGGGATTAGATCTGGTGTCCGGCCTGAGCACGGAATTGCACAACGTGAAGCGAGCGGCAACGATCGATCTGAAAGTTGTTGCAAGCTTGAGGGGGAATCTGAACGACGGAATGGCGAAACTGCAAAAACTGGTGGGGAAGGAGTTGAGCGTGGATGAAAGGAGCGGGAATTTCGTAGGCGCCATGAAGGGATTCATGAGCTACGTGAAGAAGACGATGGAGGAGGTGAGGAAGGACGAAGAAGGGGTGATGTCGAGCGTGAGGGAAATCACAGAGTACTTCCATGGAAATGTGAGCAAAGAGGAGACGAATCCGCTGAGGATATTTGTGATTGTGAGAGATTTTCTTGGAATGTTGGACAGTGTTTGTAAGAGCTTCAAGATTGGAAGTTCATAG 2691 44.41 MGCVLMIIIFMSIPFSTQNSHILIANSPLNAAESFDVEELERVSGEDESRGNEPFILERFRALLGLKSLPSDLSFSPSPSPSPSPSPAAIAPSPVHVATHRVHIHEHSHPHQLRLHKRRPVYKPKREEDAREGRVRKILVAVLVSAGVTILICSIIAFWVCKKFKTQREEATEKLSVKSETVEKSAKPNSPKSPKSGLDPFDLGMLGMDAEEEQTQCSVSEKEISVHKEGERGQEMLDSEFDNVSVSSTKEMMYVHEEDDSKSIQCVSAKADSSSGDRITPVKSCSSDDEESFHSCGDSNLSNARLSNASESSSANVITKSTCSVPTMNLPSKLETTQCDDSNKPSTSDQSHITLSPCNPESKMQMVSLSVGGQKNVPSISPPPPPPPPPPPITDRSSFSLSSPFSTGSTSSSALLRSSSPAMSDSSSLSQIPWNDLTSPNPAAKPSLPSSSIPPPPSPPPSLKAKAYSFKTPPPLPSKLPQFMAFGKEGNSRPKLKPLHWDKVRAAPDRSMVWDKLRWSSFELDEEMIESLFGYNQHDSMKNGDASNKSPSPTKHILEAKRLQNLTILLKALNLSTEQVCEAIEQGTGMRLRQLEALVKMVPTQEEEAKLLSYEGNIGELGFTENFVISILKIPFAFQRVEAMLYRETFEDEVNHLRNSFSILEEACKELKSSRLFLKLLEAVLKTGNRMNVGTSRGGARAFKLDALLKLSDVKGTDGKTSLLHFVVQEMIRSEGIRVSGSIMGKISQKNKSRTIEERENDYRRMGLDLVSGLSTELHNVKRAATIDLKVVASLRGNLNDGMAKLQKLVGKELSVDERSGNFVGAMKGFMSYVKKTMEEVRKDEEGVMSSVREITEYFHGNVSKEETNPLRIFVIVRDFLGMLDSVCKSFKIGSS 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11686100 11689844 - CmoCh10G011960.1 Cmo10g01196 390542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g01196 896 SMART it6_source 486 896 IPR015425 -
Cmo10g01196 896 MobiDBLite consensus disorder prediction 269 297 - -
Cmo10g01196 896 ProSiteProfiles Formin homology-2 (FH2) domain profile. 486 896 IPR015425 -
Cmo10g01196 896 MobiDBLite consensus disorder prediction 396 446 - -
Cmo10g01196 896 MobiDBLite consensus disorder prediction 325 377 - -
Cmo10g01196 896 MobiDBLite consensus disorder prediction 325 471 - -
Cmo10g01196 896 PANTHER FORMIN-RELATED 39 340 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cmo10g01196 896 PANTHER FORMIN-RELATED 379 892 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cmo10g01196 896 Pfam Formin Homology 2 Domain 488 884 IPR015425 -
Cmo10g01196 896 MobiDBLite consensus disorder prediction 105 128 - -
Cmo10g01196 896 PANTHER FORMIN-LIKE PROTEIN 39 340 - -
Cmo10g01196 896 PANTHER FORMIN-LIKE PROTEIN 379 892 - -
Cmo10g01196 896 MobiDBLite consensus disorder prediction 378 395 - -
Cmo10g01196 896 MobiDBLite consensus disorder prediction 170 201 - -
Cmo10g01196 896 MobiDBLite consensus disorder prediction 447 463 - -
Cmo10g01196 896 Coils Coil 647 667 - -
Cmo10g01196 896 SUPERFAMILY Formin homology 2 domain (FH2 domain) 499 889 - -
Cmo10g01196 896 Gene3D Formin, FH2 domain 483 892 IPR042201 -
Cmo10g01196 896 MobiDBLite consensus disorder prediction 105 121 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01128 Cmo10g01196 CCT
Cmo10g01196 Cmo11g01174 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01196 Cmo-Chr10:11686100 Cmo19g00201 Cmo-Chr19:1313077 2.47E-102 dispersed
Cmo10g01196 Cmo-Chr10:11686100 Cmo11g01174 Cmo-Chr11:6781255 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g01196 - - bhj:120070661 1357.04