Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g01213 ATGGAAGATCGAAATTCGTGCATTTCGAACATACAACATGAGCTAGGACGAAGTGTCAATTCAAATCCAAGCTCTGTCTTGAGTGCTGCGATTAGAGCGACGCTTAACGAAGCGAGACGAGCCATAGAGTCCATAACAAAGTTCAGCACGTTCTCGTTTAGCTATCGGGAAGAAATGGCGATTGAGGACTGCAAGGAGCTTCTCGATTTCTCTGTTTCCGAGCTCGCTTGGTCGTTAGCCGAGATGAAAAGGATTCGTACAGGCAAAAACGAGGCTCCGGATGAAGGGAATCTAAAAGCATGGCTGAGTGCTGCTCTTAGCAACCAAGACACATGCCTTGAAGGCTTTGAGGGCACAGACAGACATCTTGTAGGCTTCATTAGAGGTAGTTTGAAGCAAGTTACGCTTCTCATTAGCAATGTCTTGGCATTGTACACTCAATTACACAGCTCGCCGTTTCAACCCCCACGGAATGAAACGATAGAGATAACCAAGAGTTCGGAGTTTCCAGATTGGATGACGGATGACGAGCATGAGCTCGTGAAATCTCATCCACGTAGCGCTCATGTCGATGCAATTGTTGCTTTGGATGGAAGCGGAGATTTTCGTTCCATCACTGAGGCGGGATTCATAGCAAGAGACATGACATTTCGCAACACGGCTGGACCACAAAACCATCAAGCAGTGGCACTTCGAGTCGACTCTGATCAATCAGCCTTCTATCGGTGCAGCTTCGAAGGCTATCAAGACACGCTCTACGTCCACTCCCTACGCCAATTTTACAGGGAATGTAACATTTACGGCACGATAGACTACATCTTCGGCAACGGAGCAGCAGTATTCCAAAAATGTAACATCTACACTAGAGTTCCGCTCCCGCTTCAAAAGGTCACGATCACCGCTCAAGGTCGAAAATCCCCCCACCAGAGTACGGGGTTTTCGATCCAAGACAGCTTTATTTACGCAACTCAACCAACGTATCTTGGAAGACCATGGAAGCTATACTCAAGGACAGTCTTCTTGAACACTTACATGAGTGGCTTGGTACAACCTAGAGGATGGCTTGAGTGGTATGGTAATTTTGCTTTAGGCACATTGTGGTATGGAGAGTTCAAAAACTATGGACCCGGTGCATCCCTTTCGGGTCGGGTCAAATGGCCCGGGTACCACAATATCCGAGACACCGCTGTAGCTAGACACAACAACATGGCTTATGATGAAGATGATTCCGGGAGCAATAAGAGATACGCCATCATCGGCGTCTCGTCGATGTTACTAATCGCAATGGTGGTGGCGGTCACGGTCGGGGTTAACCTAAACAACGGCGAAGCGGGCGGTCCGACCACCGGAACCAAATCCAATGAAATATCGGCGTCGGTGAAAGCCATTAAATCCATTTGCCAATCCACTGATTATAAAAAGGACTGTGTTGATAGTCTTAAGTCTAATGCTAACAACTCTTCTGACCCACATGAATTGGTTAAAGCTGGGTTCAAAGCTGCCATGAAGTTACTCCAAGCCGCAGCTAAACAATCTGTCACCTTGCAACAACTTGAGCAAGACCCTAGAGCCTCCCAAGCCCTAGCTGGCTGTAAGGAGCTCATGGACTTCGCCATCGACGAGCTTAAATTCTCGATGAGTAGGTTTGGTGATTTCGACACTACGCACCTCGATGAGATATTGATCGATCTTAAGATTTGGCTTAGTGCCACCATTACGTACCAGGAAACTTGCTTGGATTCGTTTGAAAACACAACAGGGGATGCATCGGAGAAGATGAAGAAGGCATTGAAGACGTCGATGCGATTGAGTAGCAATGGATTGGCGATGGTGACGGAGATCTCGTCCATGTTGACAGATTTGAAGGTGCCAGGGATCGGCCGACGGCGACTTCTCGATGCTCCTGTTGTCGTTGGGCACGACGATTATCCCGAGTGGGCCGACCCCGGGATACGGCGGCTACTGGCGGCTAAGGGGAAAGTGAAGGCGAACTTTGTGGTGGCTGTGGATGGAAGTGGGGATTTCAACAACATTCAATCAGCTATTGACAAAGTTCCAAAGAGGAAGAACAACGAAACTTTTGTGATTCATATCAAGGAAGGAGTGTATAAGGAATACGTGAGCATTAAAAAATCTATCACCCATTTGATGCTCATTGGCGATGGCCCGAAAAAGACGATCATCAGTGGCCAGAAGAACTTCGTCGATGGCATAACCACATTCAAAACTGCAACCTTTGCTGCGACGGCGGAGCACTTCCTAGCAAGAGACATAGGGTTTGTGAACACGGCAGGACCACACAAGCACCAAGCAGTAGCATTACGAGTCCAAGCAGACAAAGCCATATTCTTCAACTGCGAGATGCATGGCTACCAAGACACACTCTACGTCCACACCTTGCGACAATTCTACAGAGACTGCATCGTCTCTGGCACCATCGACTTCATCTTTGGCGATGCAGCCGTCGTCTTCCAAAACTGTATCTTCCTAATCCGCAAGCCGCTTTCAAATCAACAAAACATCGTCACAGCACACGGCCGGAAGGAGCGCCGACAACCCTCCGCCCTAATCATCCAAAACTGCACCTTCAAGGCGGACACGGACCTCGCCCCAGTGAAAAATGAGTTCCGATCCTTCCTCGGGAGACCGTGGAAGGAATATTCAAGAACGATCATCATGGAATCATACATCGACGATGTGATTCATCCAGACGGGTGGTTGCCGTGGAGCGGCGACTGGGGGTTGAAGACATGCTTTTACACGGAGTTTCGGAACTACGGGCCAGGGTCGGACACGTCGAAGAGGGTGAAATGGAGGGGGGTGAAGGTTCTTACGCCGGCGCATGCGGTGGATTTCACGGCGAGTAGGTTTTTATTGGGAGATAGATGGATAAAGGCCACCGGAACACCGTACGCGCCGGGGTTGACAATGAAAGGACACAGTGAGTTACTTCTCTTGTGGTTTCGTCGTCCGTCAGTTACTTCTCTTGTGGTTTCGTCGTCCGTCAGTTACTTCTCTTGTGGTTTCGTCGTCCGTCAGTTACTTCTCTTGTGGTTTCGTCGTCCGTCAGTTACTTCTCTTGTGGTTTCGTCGTCCGTCATTTACTTCTCTTGTGGTTTCGTCGTCCGTCAGTTACTTCTCTTGTGGTTTCGTCGTCCGTCAGTTACTTCTCTTGTGGTTTCGTCGTCCGTCAGTTACTTCTCTTGTGGTTTCGTCGTCCGTCAGTTACTTCTCTTGTGGTTTCGTCGTCCGTCAGTTACTTCTCTTGTGGTTTCGTCGTCCGTCAGTTACTTCTCTTGTGGTTTCGTCGTCCGTCCGTTACTTCTCTTGTGGTTTCGTCGTCCGTCAGTTACTTCTCTTGTGGTTTCGTCTTCCCTCATTTACTTCTCTTGTGGTTTCGTCGTCCGTCAGTTACTTCTCTTGTGGTTTCGTCGTCCGTCAGTTACTTCTCTTGTGGTTTCGTCGTCCGTCGGTTACTTCTCTTGTGGTTTCGTCGTCCGTCCGTTACTTCTCTTGTGGTTTCGTCGTCCGTCCGTTACTTCTCTTGTGGTTTCGTCGTCCGTCAGTTACTTCTCTTGTGGTTTCGTCGTCCGTCAGTTACTTCTCTTGTGGTTTCGTCCTCCATCATTTACTTCTCTTGTGGTTTCGTCGTCCGTTAGTTACTTCTCTTGTGGTTTCGTCGTCCGTCAGTTACTTCTCTTGTGGTTTCGTCCTCCATCATTTACTTCTCTTGTGGTTTCGTCGTCCGTCGGTTACTTCTCTTGTGGTTTCGTCGTCCGTCGGTTACTTCTCTTGTGGTTTCGTCGTCCGTCGGTTACTTCTCTTGTGGTTTCGTCGTCCGTCAGTTACTTCTCTTGTGGTTTCGTCGTCCGTCAGTTACTTCTCTTGTGGTTTTGTCGTCCGTCAGTTACTTCTCTTGTGGTTTCGTCGTCCATCATTTACTTCTCTTGTGTTACTTCTCTTGTGGTTTCGTCGTCTGTCAGTTGCTTCTCTTGTGGTTTCGTCGTCCGTCAGTTACTTCTCTTGTGGTTTCGTCCTCCCTCATTTACTTCTCTTGTGGTTTCGTCGTCCGTCAGTTACTTCTCTTGTGGTTTTGTCGTCCGTTAG 4107 48.65 MEDRNSCISNIQHELGRSVNSNPSSVLSAAIRATLNEARRAIESITKFSTFSFSYREEMAIEDCKELLDFSVSELAWSLAEMKRIRTGKNEAPDEGNLKAWLSAALSNQDTCLEGFEGTDRHLVGFIRGSLKQVTLLISNVLALYTQLHSSPFQPPRNETIEITKSSEFPDWMTDDEHELVKSHPRSAHVDAIVALDGSGDFRSITEAGFIARDMTFRNTAGPQNHQAVALRVDSDQSAFYRCSFEGYQDTLYVHSLRQFYRECNIYGTIDYIFGNGAAVFQKCNIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSFIYATQPTYLGRPWKLYSRTVFLNTYMSGLVQPRGWLEWYGNFALGTLWYGEFKNYGPGASLSGRVKWPGYHNIRDTAVARHNNMAYDEDDSGSNKRYAIIGVSSMLLIAMVVAVTVGVNLNNGEAGGPTTGTKSNEISASVKAIKSICQSTDYKKDCVDSLKSNANNSSDPHELVKAGFKAAMKLLQAAAKQSVTLQQLEQDPRASQALAGCKELMDFAIDELKFSMSRFGDFDTTHLDEILIDLKIWLSATITYQETCLDSFENTTGDASEKMKKALKTSMRLSSNGLAMVTEISSMLTDLKVPGIGRRRLLDAPVVVGHDDYPEWADPGIRRLLAAKGKVKANFVVAVDGSGDFNNIQSAIDKVPKRKNNETFVIHIKEGVYKEYVSIKKSITHLMLIGDGPKKTIISGQKNFVDGITTFKTATFAATAEHFLARDIGFVNTAGPHKHQAVALRVQADKAIFFNCEMHGYQDTLYVHTLRQFYRDCIVSGTIDFIFGDAAVVFQNCIFLIRKPLSNQQNIVTAHGRKERRQPSALIIQNCTFKADTDLAPVKNEFRSFLGRPWKEYSRTIIMESYIDDVIHPDGWLPWSGDWGLKTCFYTEFRNYGPGSDTSKRVKWRGVKVLTPAHAVDFTASRFLLGDRWIKATGTPYAPGLTMKGHSELLLLWFRRPSVTSLVVSSSVSYFSCGFVVRQLLLLWFRRPSVTSLVVSSSVIYFSCGFVVRQLLLLWFRRPSVTSLVVSSSVSYFSCGFVVRQLLLLWFRRPSVTSLVVSSSVSYFSCGFVVRPLLLLWFRRPSVTSLVVSSSLIYFSCGFVVRQLLLLWFRRPSVTSLVVSSSVGYFSCGFVVRPLLLLWFRRPSVTSLVVSSSVSYFSCGFVVRQLLLLWFRPPSFTSLVVSSSVSYFSCGFVVRQLLLLWFRPPSFTSLVVSSSVGYFSCGFVVRRLLLLWFRRPSVTSLVVSSSVSYFSCGFVVRQLLLLWFCRPSVTSLVVSSSIIYFSCVTSLVVSSSVSCFSCGFVVRQLLLLWFRPPSFTSLVVSSSVSYFSCGFVVR 1368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11879386 11888301 + CmoCh10G012130.1 Cmo10g01213 390559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g01213 1368 SUPERFAMILY Pectin lyase-like 190 398 IPR011050 -
Cmo10g01213 1368 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 150 IPR035513 -
Cmo10g01213 1368 Pfam Pectinesterase 665 961 IPR000070 GO:0030599|GO:0042545
Cmo10g01213 1368 Pfam Pectinesterase 206 399 IPR000070 GO:0030599|GO:0042545
Cmo10g01213 1368 PANTHER PECTINESTERASE 209 408 - -
Cmo10g01213 1368 PANTHER PECTINESTERASE 4 208 - -
Cmo10g01213 1368 TIGRFAM PME_inhib: pectinesterase inhibitor domain 457 613 IPR006501 GO:0004857
Cmo10g01213 1368 TIGRFAM PME_inhib: pectinesterase inhibitor domain 3 149 IPR006501 GO:0004857
Cmo10g01213 1368 Gene3D - 658 975 IPR012334 -
Cmo10g01213 1368 Gene3D - 204 414 IPR012334 -
Cmo10g01213 1368 SMART PMEI_2 1 144 IPR006501 GO:0004857
Cmo10g01213 1368 SMART PMEI_2 458 610 IPR006501 GO:0004857
Cmo10g01213 1368 Gene3D Invertase/pectin methylesterase inhibitor family protein 458 615 IPR035513 -
Cmo10g01213 1368 Pfam Plant invertase/pectin methylesterase inhibitor 462 610 IPR006501 GO:0004857
Cmo10g01213 1368 Pfam Plant invertase/pectin methylesterase inhibitor 3 144 IPR006501 GO:0004857
Cmo10g01213 1368 SUPERFAMILY Pectin lyase-like 662 974 IPR011050 -
Cmo10g01213 1368 ProSitePatterns Pectinesterase signature 2. 809 818 IPR033131 -
Cmo10g01213 1368 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 461 615 IPR035513 -
Cmo10g01213 1368 CDD PMEI-like_3 465 616 - -
Cmo10g01213 1368 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 3 149 IPR035513 -
Cmo10g01213 1368 CDD PMEI-like_3 6 150 - -
Cmo10g01213 1368 ProSitePatterns Pectinesterase signature 1. 690 709 IPR018040 -
Cmo10g01213 1368 PANTHER PECTINESTERASE 418 978 - -
Cmo10g01213 1368 PANTHER PECTINESTERASE 418 978 - -
Cmo10g01213 1368 PANTHER PECTINESTERASE 209 408 - -
Cmo10g01213 1368 PANTHER PECTINESTERASE 4 208 - -
Cmo10g01213 1368 ProSitePatterns Pectinesterase signature 2. 266 275 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02277 Cmo-Chr4:16966055 Cmo10g01213 Cmo-Chr10:11879386 9.01E-57 dispersed
Cmo10g01213 Cmo-Chr10:11879386 Cmo11g01246 Cmo-Chr11:7830333 5.63E-18 dispersed
Cmo10g01213 Cmo-Chr10:11879386 Cmo17g00328 Cmo-Chr17:1985349 8.70E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g01213 K01051 - csv:101207393 912.138