Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g01229 ATGAGTCAGACAGAAGTATCAAGGATTAAGCCCCCTCTCGTTCCGCTCGCTACTTTGATCGGTCGCGAGCTGAGGAACGAGAAGGTTGAGAAACCTTTTGTGAAGTATGGACAGGCTGCTTTGGCAAAGAAAGGGGAGGACTACTTTCTGATCAAATTAGATTGCCAGCGTATTCCTGGGAACACTTCCACCACGTTTTCTGTCTTTGCGATTTTTGATGGACATAATGGCATTTCAGCGGCTATTTTTGCTAAGGAACATTTATTGGGTAATGTCCTAAGTGCAATTCCTCAAGGGGTCAGTCGAGAAAAATGGCTTCAAGCCCTTCCTCGAGCACTAGTTGCTGGTTTTGTTAAAACCGACATAGAGTTTCAGCAGAAAGGGGAAACTTCTGGGACTACTGTTACATTTGTTGTGATTGATGGGTGGACTGTTACCGTTGCATCCGTGGGAGATTCACGGTGCATATTAGACACCCAAGGAGGTGTGGTTTCTCTATTGACAGTTGATCATAGGCTGGAGGAAAACGAGGAAGAGAGGGAACGTGTAACTGCAAGTGGTGGCGAGGTTGGGAGGCTCAATGTTTTTGGCGGGAATGAGGTCGGTCCTCTCCGCTGCTGGCCCGGTGGCTTATGTCTGTCTAGGTCCATTGGTGATACAGATGTAGGAGAATATATTGTCCCAATACCGCATGTTAAGCAAGTGAAGGTGACTTCTCAATCTTTCAGTAATTGTTTAACTACTAATAGAATGTACCTTGACTATTCTGCTATCTTTTTATTCTGGATTATACAGCTTTCTAATGCTGGTGGAAGGCTGATTATTGCTTCTGATGGTATTTGGGACACATTATCGTCTGATATGGCTGCAAAGTCGGGGTTGAAGGATGATACAACTTGCTTAGTTGTTGATATTATCCCATCCGAGCAACCTATGTTATTACCATCAACTCCAAGGAAGAAGCAGAATGTGCTCACTTCTCTCTTTGGTAAATCTGCCAACAAACTTTCTGCTGTTGGAGTTGTGGAGGAATTGTTTGAAGAAGGCTCTGCTATGCTTTCTGAAAGGTTAGGGAAAGATTTTCCTTCGGATCCAAACTCAGGGATCTTCAAATGTGCAGTCTGTCAAGCGGATCAACCCGCAAATGAAAATTTGTCGATGAATTCGGAGCCGTTCTTTTCACCGTCGTCAAAGCCATGGGAAGGTCCATTCCTCTGTGCAAAGTGTAGAAGAAAGAAAGACGCCATGGAAGGGAAAAGGCCAATAAAACCTACAATAACTGTTTAG 1287 44.29 MSQTEVSRIKPPLVPLATLIGRELRNEKVEKPFVKYGQAALAKKGEDYFLIKLDCQRIPGNTSTTFSVFAIFDGHNGISAAIFAKEHLLGNVLSAIPQGVSREKWLQALPRALVAGFVKTDIEFQQKGETSGTTVTFVVIDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENEEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKVTSQSFSNCLTTNRMYLDYSAIFLFWIIQLSNAGGRLIIASDGIWDTLSSDMAAKSGLKDDTTCLVVDIIPSEQPMLLPSTPRKKQNVLTSLFGKSANKLSAVGVVEELFEEGSAMLSERLGKDFPSDPNSGIFKCAVCQADQPANENLSMNSEPFFSPSSKPWEGPFLCAKCRRKKDAMEGKRPIKPTITV 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12283438 12287809 + CmoCh10G012290.1 Cmo10g01229 390575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g01229 428 Pfam Protein phosphatase 2C 63 240 IPR001932 -
Cmo10g01229 428 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 2 238 - -
Cmo10g01229 428 PANTHER ALPHABET, ISOFORM E-RELATED 2 238 - -
Cmo10g01229 428 PANTHER ALPHABET, ISOFORM E-RELATED 292 427 - -
Cmo10g01229 428 PANTHER ALPHABET, ISOFORM E-RELATED 261 292 - -
Cmo10g01229 428 ProSiteProfiles PPM-type phosphatase domain profile. 32 305 IPR001932 -
Cmo10g01229 428 SUPERFAMILY PP2C-like 43 305 IPR036457 -
Cmo10g01229 428 Gene3D - 38 310 IPR036457 -
Cmo10g01229 428 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 292 427 - -
Cmo10g01229 428 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 261 292 - -
Cmo10g01229 428 CDD PP2Cc 43 305 IPR001932 -
Cmo10g01229 428 SMART PP2C_4 23 303 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g01229 Cmo11g01302 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01229 Cmo-Chr10:12283438 Cmo11g01302 Cmo-Chr11:8904360 0 dispersed
Cmo10g01229 Cmo-Chr10:12283438 Cmo04g01566 Cmo-Chr4:8006180 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g01229 - - csv:101219622 726.857