Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo10g01231 | ATGGCGTCCTTCATAAAGCCAGAGAATGCTTTAAAACGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAGCCCTTCACGATCTTATCACTTCAAAGAAATATCGAGCATGGCAGAAACCTCTTGAGAGGATTATGTTCAAGTATGTTGAGCTCTGTGTGGACATGAGGAAAGGAAGGTTTGCGAAGGATGGTTTAATTCAATACCGTATTGTTTGCCAGCAAGTCAATGTTACTTCTTTAGAGGAAGTAATCAAGCACTTTATGCATCTTTCCACTGAGAAGGCAGAGCAGGCTCGTAGCCAAGCTCAAGCTTTAGAAGAAGCTCTGGATGTTGATGATTTGGAAGCTGATAAAAGGCCAGAAGATCTGATGCTTAGTTATGTCAGTGGTGAGAAGGGAAAGGATAGATCTGATCGTGAACTTGTTACCCCTTGGTTTAAATTTCTGTGGGAGACATATCGTACAGTTCTTGAGATACTTAGGAATAACTCAAAGTTGGAGGCACTTTATGCGATGACAGCCCATCGTGCCTTCCAGTTCTGTAAGACGTATAAAAGAACAACAGAATTTCGCAGATTATGTGAAATTATCAGAAATCATCTTGCTAATCTCAACAAGTATAGAGACCAAAGAGATCGTCCTGACATTTCTACTCCAGAGACCTTGCAATTGTACCTTGACACTAGATTTGAACAACTGAAGGTTGCCACAGAGCTTGAGCTCTGGCAGGAAGCTTTTCGTTCGGTGGAAGATATTCATGGTTTGATGTGCATGGTGAAGAAAACACCTAAACCATCCTTGATGGTTGTTTATTACGTCAAATTAACAGAGATATTCTGGATATCGAAGAGCAATCTTTATCATGCCTGTGCTTGGCTTAAACTTTTCTCCCTTCAGAAGAGTTTCAACAAAAATTTAAGCCAGAAGGATTTGCAGCTGATAGCTTCATCTGTTCTTTTAGCAGCTCTTGCTGTGTCCCCTTATGACTCTAAACACGGTGCTTCTCATTTAGAACTTGAACATGAGAAAGAGCGGAATTTGAGGATGGCTAATCTTATAGGGTTCAATTTAGACTCCAAACTTGAAAGTAGAGATGTGCTTTCAAGATCGAATCTTCTTTCTGAACTGGTGTCTAAGGGAGTCCTGAGCTGCGCAACTCAGGAAGTTAAAGATCTCTATCATCTTTTGGAGCATGAATTCTTCCCTCTTGATCTTGCAACAAAATTGCAACCTTTACTAAACAAAATATCGAAGCTTGGAGGCAAGCTTTCATCAGCTTCATCTGTCCCTGAAGTGCAATTGTCCCAGTATGTTCCGGCTCTTGAAAAACTTGCTACCCTGAGGTTGCTTCAACAGGTCTCCAAGGTGTATCAGACTATGAAAATTGAGAGTCTATCTCAGATGATCCCATTTTTTGATTTTTCGGCCGTGGAGAAAATATCAGTTGATGCAGTTAAACAAAATTTCATTGCCATGAAAGTTGATCATTCAAGGAACATTGTGTTATTTGGCACTTTGGGTATTGAATCAGATGGGCTTCGGGACCACCTGGCTGTTCTCGCCGAATCCTTAAACAAGGCAAGAGCTATGATCTATCCTCCAGTTAGGAAAGTATCAAAAACAGGTGAGATACTGCCTGATTTGGCAGATATTGTTGATAAAGAACACAAGAGGCTGCTTGCTCGGAAATCAATAATTGAGAAAAGGAAGGAAGAGCAGGAACGACAACTTTTGGAAATGGAACGTGAGGAGGAATCAAGGAGGTTAAAATTACTGAAGATAACTGAAGAGGCTGAGCAGAAGCGCCTAGCTGCAGAATATGAACAAAGGAAAAACCAACGCCTGCGTAGGGAAATGGAAGAGCGAGAGCTTGAAGAAGCACAGGCTTTACTTCAGGAAGCTGAAAAGCGTGTTGGTAAAAAGAAGGGAAGCAGGAAGCCGGTCCTTGACTCTGAAAAGATGACGAAACAAACTTTAATGCAATTGGCCCTTACGGAACAATTAAGGGAGAGGCAGGAAATGGAGAAGAAATTGCAAAAGCTAGCCAAAACTATGGATTATCTAGAAAGGGCAAAAAGAGAGGAGGCTGCAACTTTAATTGAAGCTGCATTTCAGCAACGTTTGCTCGAAGAGCGAATGATTCATGAACGCGATCAGCAGCTGGAGGTTGAGTTAAGCAAGCAACGCCACGAAGGTGATCTCAAGGAGAAGAATCGATTGGCTAGAATGTTGGAGAGTAAGAAAATTTTCCAAGAAAGAGTCATTAATCTTCGCCAAGAGGAGTTCAGCAGACGCAGAGTTGAGAGAGAAGAACAAATCAGGCAAATAATTCATGCTCGGAAAGCAGAAAGGGAGGCTAAGAGGAAGAAAATCTTTTATGTAAGGCGTGAGGAGGAGAGGATTCGAATTTTACGCGAAGAGGAGGAAGCACGCAAACGTGAAGAGGCCGAGAGGAGAAAGAGGGAAGAGGCTGAACGCAAGGCTAAATTGGATGAGATTGCTGAGAAGCAGAGACAGAGGGAGCGAGAACTGGAAGAAAAGGAAAGGCGGCGGAAAGAAATGCTCTTTGGTGGTGGGGCACCAGCCGATGCACCTTCTAGACCTTATGTTTCTCCTGTTTCTCAACCTCTGGAGTCCGGGGCTGCTGCTGCTCCTGCTGCTGCCGCCGCCCCAGCCCCAGCGAAGTATGTGCCTAGGTTTCGACGTACTGAAAGCTCTAGCCCTAATGCACCACCACCTGAATCTGATCGATGGGGAAGCAGCAGGTCCGATAATCGACCATCTCAACCAGATAGCTGGCGCAGTGATGAACGCAGATCTGCTTTTGGAAGTTCAAGGTCGTCCTGGTCGTCATCCCGAGGTCCTAATCGTGGTAGCTCGGATCGCTGA | 2904 | 43.87 | MASFIKPENALKRAEELINVGQKQDALQALHDLITSKKYRAWQKPLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKTYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDISTPETLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISKSNLYHACAWLKLFSLQKSFNKNLSQKDLQLIASSVLLAALAVSPYDSKHGASHLELEHEKERNLRMANLIGFNLDSKLESRDVLSRSNLLSELVSKGVLSCATQEVKDLYHLLEHEFFPLDLATKLQPLLNKISKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSKVYQTMKIESLSQMIPFFDFSAVEKISVDAVKQNFIAMKVDHSRNIVLFGTLGIESDGLRDHLAVLAESLNKARAMIYPPVRKVSKTGEILPDLADIVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLLKITEEAEQKRLAAEYEQRKNQRLRREMEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKMTKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIEAAFQQRLLEERMIHERDQQLEVELSKQRHEGDLKEKNRLARMLESKKIFQERVINLRQEEFSRRRVEREEQIRQIIHARKAEREAKRKKIFYVRREEERIRILREEEEARKREEAERRKREEAERKAKLDEIAEKQRQRERELEEKERRRKEMLFGGGAPADAPSRPYVSPVSQPLESGAAAAPAAAAAPAPAKYVPRFRRTESSSPNAPPPESDRWGSSRSDNRPSQPDSWRSDERRSAFGSSRSSWSSSRGPNRGSSDR | 967 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 12297068 | 12305602 | - | CmoCh10G012310.1 | Cmo10g01231 | 390577 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo10g01231 | 967 | Coils | Coil | 669 | 699 | - | - | |
Cmo10g01231 | 967 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A | 1 | 910 | - | - | |
Cmo10g01231 | 967 | Coils | Coil | 603 | 649 | - | - | |
Cmo10g01231 | 967 | Hamap | Eukaryotic translation initiation factor 3 subunit A [EIF3A]. | 1 | 942 | IPR027512 | GO:0005852 | |
Cmo10g01231 | 967 | Pfam | PCI domain | 373 | 509 | IPR000717 | - | |
Cmo10g01231 | 967 | Coils | Coil | 799 | 858 | - | - | |
Cmo10g01231 | 967 | Coils | Coil | 732 | 752 | - | - | |
Cmo10g01231 | 967 | MobiDBLite | consensus disorder prediction | 907 | 933 | - | - | |
Cmo10g01231 | 967 | MobiDBLite | consensus disorder prediction | 815 | 967 | - | - | |
Cmo10g01231 | 967 | SMART | PINT_4 | 441 | 532 | IPR000717 | - | |
Cmo10g01231 | 967 | Coils | Coil | 561 | 600 | - | - | |
Cmo10g01231 | 967 | Gene3D | UVR domain | 217 | 268 | - | - | |
Cmo10g01231 | 967 | MobiDBLite | consensus disorder prediction | 815 | 861 | - | - | |
Cmo10g01231 | 967 | Gene3D | - | 362 | 494 | - | - | |
Cmo10g01231 | 967 | Gene3D | - | 269 | 343 | - | - | |
Cmo10g01231 | 967 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 441 | 532 | - | - | |
Cmo10g01231 | 967 | Coils | Coil | 93 | 120 | - | - | |
Cmo10g01231 | 967 | ProSiteProfiles | PCI domain profile. | 316 | 513 | IPR000717 | - | |
Cmo10g01231 | 967 | MobiDBLite | consensus disorder prediction | 947 | 967 | - | - | |
Cmo10g01231 | 967 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT | 1 | 910 | IPR027512 | GO:0005852 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo10g01231 | Cmo-Chr10:12297068 | Cmo11g01303 | Cmo-Chr11:8914011 | 0 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo10g01231 | K03254 | - | csv:101209344 | 1496.87 |