Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g01231 ATGGCGTCCTTCATAAAGCCAGAGAATGCTTTAAAACGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAGCCCTTCACGATCTTATCACTTCAAAGAAATATCGAGCATGGCAGAAACCTCTTGAGAGGATTATGTTCAAGTATGTTGAGCTCTGTGTGGACATGAGGAAAGGAAGGTTTGCGAAGGATGGTTTAATTCAATACCGTATTGTTTGCCAGCAAGTCAATGTTACTTCTTTAGAGGAAGTAATCAAGCACTTTATGCATCTTTCCACTGAGAAGGCAGAGCAGGCTCGTAGCCAAGCTCAAGCTTTAGAAGAAGCTCTGGATGTTGATGATTTGGAAGCTGATAAAAGGCCAGAAGATCTGATGCTTAGTTATGTCAGTGGTGAGAAGGGAAAGGATAGATCTGATCGTGAACTTGTTACCCCTTGGTTTAAATTTCTGTGGGAGACATATCGTACAGTTCTTGAGATACTTAGGAATAACTCAAAGTTGGAGGCACTTTATGCGATGACAGCCCATCGTGCCTTCCAGTTCTGTAAGACGTATAAAAGAACAACAGAATTTCGCAGATTATGTGAAATTATCAGAAATCATCTTGCTAATCTCAACAAGTATAGAGACCAAAGAGATCGTCCTGACATTTCTACTCCAGAGACCTTGCAATTGTACCTTGACACTAGATTTGAACAACTGAAGGTTGCCACAGAGCTTGAGCTCTGGCAGGAAGCTTTTCGTTCGGTGGAAGATATTCATGGTTTGATGTGCATGGTGAAGAAAACACCTAAACCATCCTTGATGGTTGTTTATTACGTCAAATTAACAGAGATATTCTGGATATCGAAGAGCAATCTTTATCATGCCTGTGCTTGGCTTAAACTTTTCTCCCTTCAGAAGAGTTTCAACAAAAATTTAAGCCAGAAGGATTTGCAGCTGATAGCTTCATCTGTTCTTTTAGCAGCTCTTGCTGTGTCCCCTTATGACTCTAAACACGGTGCTTCTCATTTAGAACTTGAACATGAGAAAGAGCGGAATTTGAGGATGGCTAATCTTATAGGGTTCAATTTAGACTCCAAACTTGAAAGTAGAGATGTGCTTTCAAGATCGAATCTTCTTTCTGAACTGGTGTCTAAGGGAGTCCTGAGCTGCGCAACTCAGGAAGTTAAAGATCTCTATCATCTTTTGGAGCATGAATTCTTCCCTCTTGATCTTGCAACAAAATTGCAACCTTTACTAAACAAAATATCGAAGCTTGGAGGCAAGCTTTCATCAGCTTCATCTGTCCCTGAAGTGCAATTGTCCCAGTATGTTCCGGCTCTTGAAAAACTTGCTACCCTGAGGTTGCTTCAACAGGTCTCCAAGGTGTATCAGACTATGAAAATTGAGAGTCTATCTCAGATGATCCCATTTTTTGATTTTTCGGCCGTGGAGAAAATATCAGTTGATGCAGTTAAACAAAATTTCATTGCCATGAAAGTTGATCATTCAAGGAACATTGTGTTATTTGGCACTTTGGGTATTGAATCAGATGGGCTTCGGGACCACCTGGCTGTTCTCGCCGAATCCTTAAACAAGGCAAGAGCTATGATCTATCCTCCAGTTAGGAAAGTATCAAAAACAGGTGAGATACTGCCTGATTTGGCAGATATTGTTGATAAAGAACACAAGAGGCTGCTTGCTCGGAAATCAATAATTGAGAAAAGGAAGGAAGAGCAGGAACGACAACTTTTGGAAATGGAACGTGAGGAGGAATCAAGGAGGTTAAAATTACTGAAGATAACTGAAGAGGCTGAGCAGAAGCGCCTAGCTGCAGAATATGAACAAAGGAAAAACCAACGCCTGCGTAGGGAAATGGAAGAGCGAGAGCTTGAAGAAGCACAGGCTTTACTTCAGGAAGCTGAAAAGCGTGTTGGTAAAAAGAAGGGAAGCAGGAAGCCGGTCCTTGACTCTGAAAAGATGACGAAACAAACTTTAATGCAATTGGCCCTTACGGAACAATTAAGGGAGAGGCAGGAAATGGAGAAGAAATTGCAAAAGCTAGCCAAAACTATGGATTATCTAGAAAGGGCAAAAAGAGAGGAGGCTGCAACTTTAATTGAAGCTGCATTTCAGCAACGTTTGCTCGAAGAGCGAATGATTCATGAACGCGATCAGCAGCTGGAGGTTGAGTTAAGCAAGCAACGCCACGAAGGTGATCTCAAGGAGAAGAATCGATTGGCTAGAATGTTGGAGAGTAAGAAAATTTTCCAAGAAAGAGTCATTAATCTTCGCCAAGAGGAGTTCAGCAGACGCAGAGTTGAGAGAGAAGAACAAATCAGGCAAATAATTCATGCTCGGAAAGCAGAAAGGGAGGCTAAGAGGAAGAAAATCTTTTATGTAAGGCGTGAGGAGGAGAGGATTCGAATTTTACGCGAAGAGGAGGAAGCACGCAAACGTGAAGAGGCCGAGAGGAGAAAGAGGGAAGAGGCTGAACGCAAGGCTAAATTGGATGAGATTGCTGAGAAGCAGAGACAGAGGGAGCGAGAACTGGAAGAAAAGGAAAGGCGGCGGAAAGAAATGCTCTTTGGTGGTGGGGCACCAGCCGATGCACCTTCTAGACCTTATGTTTCTCCTGTTTCTCAACCTCTGGAGTCCGGGGCTGCTGCTGCTCCTGCTGCTGCCGCCGCCCCAGCCCCAGCGAAGTATGTGCCTAGGTTTCGACGTACTGAAAGCTCTAGCCCTAATGCACCACCACCTGAATCTGATCGATGGGGAAGCAGCAGGTCCGATAATCGACCATCTCAACCAGATAGCTGGCGCAGTGATGAACGCAGATCTGCTTTTGGAAGTTCAAGGTCGTCCTGGTCGTCATCCCGAGGTCCTAATCGTGGTAGCTCGGATCGCTGA 2904 43.87 MASFIKPENALKRAEELINVGQKQDALQALHDLITSKKYRAWQKPLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKTYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDISTPETLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISKSNLYHACAWLKLFSLQKSFNKNLSQKDLQLIASSVLLAALAVSPYDSKHGASHLELEHEKERNLRMANLIGFNLDSKLESRDVLSRSNLLSELVSKGVLSCATQEVKDLYHLLEHEFFPLDLATKLQPLLNKISKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSKVYQTMKIESLSQMIPFFDFSAVEKISVDAVKQNFIAMKVDHSRNIVLFGTLGIESDGLRDHLAVLAESLNKARAMIYPPVRKVSKTGEILPDLADIVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLLKITEEAEQKRLAAEYEQRKNQRLRREMEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKMTKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIEAAFQQRLLEERMIHERDQQLEVELSKQRHEGDLKEKNRLARMLESKKIFQERVINLRQEEFSRRRVEREEQIRQIIHARKAEREAKRKKIFYVRREEERIRILREEEEARKREEAERRKREEAERKAKLDEIAEKQRQRERELEEKERRRKEMLFGGGAPADAPSRPYVSPVSQPLESGAAAAPAAAAAPAPAKYVPRFRRTESSSPNAPPPESDRWGSSRSDNRPSQPDSWRSDERRSAFGSSRSSWSSSRGPNRGSSDR 967
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12297068 12305602 - CmoCh10G012310.1 Cmo10g01231 390577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g01231 967 Coils Coil 669 699 - -
Cmo10g01231 967 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 1 910 - -
Cmo10g01231 967 Coils Coil 603 649 - -
Cmo10g01231 967 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 942 IPR027512 GO:0005852
Cmo10g01231 967 Pfam PCI domain 373 509 IPR000717 -
Cmo10g01231 967 Coils Coil 799 858 - -
Cmo10g01231 967 Coils Coil 732 752 - -
Cmo10g01231 967 MobiDBLite consensus disorder prediction 907 933 - -
Cmo10g01231 967 MobiDBLite consensus disorder prediction 815 967 - -
Cmo10g01231 967 SMART PINT_4 441 532 IPR000717 -
Cmo10g01231 967 Coils Coil 561 600 - -
Cmo10g01231 967 Gene3D UVR domain 217 268 - -
Cmo10g01231 967 MobiDBLite consensus disorder prediction 815 861 - -
Cmo10g01231 967 Gene3D - 362 494 - -
Cmo10g01231 967 Gene3D - 269 343 - -
Cmo10g01231 967 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 - -
Cmo10g01231 967 Coils Coil 93 120 - -
Cmo10g01231 967 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Cmo10g01231 967 MobiDBLite consensus disorder prediction 947 967 - -
Cmo10g01231 967 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 910 IPR027512 GO:0005852
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01231 Cmo-Chr10:12297068 Cmo11g01303 Cmo-Chr11:8914011 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g01231 K03254 - csv:101209344 1496.87