Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g01232 ATGGATTCCGGTAGTTCGTGTTCTGTTCATTTTCCCGGAAAATCAAGAACTCGGGGAAGAACGACGAGCACAAGAAACCGACCATACCTCGAAAAGGCAATGGAGCACTTGTTCATGAAGCTCAAGAAATGGAAGAACTCTGAAAATGCTTCTGCTGCTGAAGCAATGGCAAAGTCTGCAAAGAAGAAGGATTTGATCATTCGTGGCTCGGGGACTATACATATCGACGGTTCAAGCAACTTCGTCTCGAGTTTCTCGAAGCGGGGCGAGAAGGGTATCAATCAGGACTGCTGCATTGTGTGGGAGGGATTTGGATGTCAAAAGGATATGATGTTTTGTGGTGTTTTTGATGGGCATGGACCATGGGGCCATTTTGTTGCAAAGAAGGTTAGAGAATCAATGCCAATAGCTTTGCTCTACAATTGGCAAGAAGCACTTGTTCAAGCTTCTCTTCACTCACATTTGGAACTCAACTTAGCCAAAACACATCTAAAGTTCAATTTATGGGAGCATTCTTATATACAAGCTTGTGCTATGGTGGATCGAGAGCTCGAACGACACCGTAAAATCGACACGTTTCATAGTGGAACGACGGCGCTTTCCATCGTTCGACAAGGTGATACAATTATCATTGCAAACCTCGGTGACTCCCGCGCCGTGTTGGCTACAACTTCTAACGATGGAAACTCGATGCCGACACCAATTCAGCTCACTATCGATTTCAAGCCGAATCTACCTCAGGAGGCCGAGAGGATAGCACAATGCAACGGGCGGGTTTTCTGCTTGCAAGATGAACCCGGGACGCACCGTATTTGGTTGCCGAACGGGGAAACGCCGGGGCTATCATTGTCGAGATCGTTCGGAGATTTTTGTGTTAAGCATTTCGGTCTCATTTCCATGCCTGATGTAACACAAAGAAGTGTAACCAACCAAGACTTGTTTGTTGTACTTGCAACAGATGGGATATGGGACGTGGTGTCGAATCAAGAGGCGGTACAAATCGTACATTCGACCGTCGATAGAGAAAAATCAGCTCGACGTCTAGTCGATTATGCTACCGGTGCATGGAAGCGGAGGAGGCCGGGAATTGCAGCGGACGACATGTCGGTTATTGTCCTCTTTCTCCATTCTTCACCTTTGCATCATTAA 1149 46.74 MDSGSSCSVHFPGKSRTRGRTTSTRNRPYLEKAMEHLFMKLKKWKNSENASAAEAMAKSAKKKDLIIRGSGTIHIDGSSNFVSSFSKRGEKGINQDCCIVWEGFGCQKDMMFCGVFDGHGPWGHFVAKKVRESMPIALLYNWQEALVQASLHSHLELNLAKTHLKFNLWEHSYIQACAMVDRELERHRKIDTFHSGTTALSIVRQGDTIIIANLGDSRAVLATTSNDGNSMPTPIQLTIDFKPNLPQEAERIAQCNGRVFCLQDEPGTHRIWLPNGETPGLSLSRSFGDFCVKHFGLISMPDVTQRSVTNQDLFVVLATDGIWDVVSNQEAVQIVHSTVDREKSARRLVDYATGAWKRRRPGIAADDMSVIVLFLHSSPLHH 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12315055 12320636 - CmoCh10G012320.1 Cmo10g01232 390578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g01232 382 ProSiteProfiles PPM-type phosphatase domain profile. 81 375 IPR001932 -
Cmo10g01232 382 PANTHER ALPHABET, ISOFORM E-RELATED 38 380 - -
Cmo10g01232 382 Gene3D - 75 377 IPR036457 -
Cmo10g01232 382 MobiDBLite consensus disorder prediction 1 26 - -
Cmo10g01232 382 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 38 380 - -
Cmo10g01232 382 Pfam Protein phosphatase 2C 105 352 IPR001932 -
Cmo10g01232 382 SUPERFAMILY PP2C-like 78 376 IPR036457 -
Cmo10g01232 382 CDD PP2Cc 80 375 IPR001932 -
Cmo10g01232 382 SMART PP2C_4 72 373 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01232 Cmo-Chr10:12315055 Cmo12g01059 Cmo-Chr12:9784265 8.95E-171 dispersed
Cmo10g01232 Cmo-Chr10:12315055 Cmo05g01107 Cmo-Chr5:8818065 2.65E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g01232 - - csv:101205485 600.127