Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g01242 ATGGATGCGATTGCTTCGAACTTAGAAGAGTCGAGAAGTTCTGATTTCACGGAGCAGCGGCCGAGGAAACGCCGAAAAATCGAATCGGAGAATCAAGCGGCGGAGATTTGTAGCGCCAGATCTACGGATTTAAAAAGACGGTGGAGAACAGAGACGGAGCAACAGATTTACTCTTCGAAACTAGTCGAGGCACTTCACCGCGTAACTCGGAGAACCGCATCGCCGCCAGCGAAATCTTCGATCAACGGCCGAAAAGTCCGCGAGACGGCGGACACAGTCCTTGCCGTTGCCGCCAAAGGCAAGACTCGCTGGAGCAGAGCCATCCTGACGAATCGGCTCGAACTCAAACTCAAGAAGCACAAGAAGGCGAAGCCGGCTGGAAACTGTTTCCGGCCGAAGAAAGTGAAAATTAGGTACGAGACGAGAAAATTGCCGACGGTACAGAGGAAAGTTCAAACTCTCGGCCGCCTGGTTCCCGGCTGCCGTAAAATCTCATTCCCGAACCTCCTTGACGAAGCTACGGATTATATCGCCGCTCTACAGATGCAGGTCCGCGCCATGACAGCCGTCGCCGAGCTTCTCGCCGGCACTCCGGCTGATCAACAACAAAGCTTCAGAACAAATTCGTAG 630 53.49 MDAIASNLEESRSSDFTEQRPRKRRKIESENQAAEICSARSTDLKRRWRTETEQQIYSSKLVEALHRVTRRTASPPAKSSINGRKVRETADTVLAVAAKGKTRWSRAILTNRLELKLKKHKKAKPAGNCFRPKKVKIRYETRKLPTVQRKVQTLGRLVPGCRKISFPNLLDEATDYIAALQMQVRAMTAVAELLAGTPADQQQSFRTNS 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12527421 12528305 + CmoCh10G012420.1 Cmo10g01242 390588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g01242 209 MobiDBLite consensus disorder prediction 13 31 - -
Cmo10g01242 209 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Cmo10g01242 209 CDD bHLH_AtIBH1_like 138 189 IPR044549 GO:0006355
Cmo10g01242 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 197 IPR036638 GO:0046983
Cmo10g01242 209 MobiDBLite consensus disorder prediction 1 34 - -
Cmo10g01242 209 PANTHER TRANSCRIPTION FACTOR BHLH149 17 205 - -
Cmo10g01242 209 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 17 205 IPR044660 GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01251 Cmo-Chr8:7898614 Cmo10g01242 Cmo-Chr10:12527421 7.07E-47 dispersed
Cmo10g01242 Cmo-Chr10:12527421 Cmo17g00365 Cmo-Chr17:2240071 1.25E-53 dispersed
Cmo11g01293 Cmo-Chr11:8782940 Cmo10g01242 Cmo-Chr10:12527421 1.04E-99 transposed
Cmo10g01242 Cmo-Chr10:12527421 Cmo05g01078 Cmo-Chr5:8664597 6.16E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g01242 - - csv:101222379 266.544