Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g01261 ATGGATAAACGGAGTTACAGTAGTAGACTGGAAACAAACAACCCAAATAAAGCCTATGCAAAGGAGCAGGATTCTCTTGGTGATGACTTCATAGATGATTTTCGCTTGCCCATCAACCATAGACCAACAGAAAATGTTGATCTTGATAATGTGGAACAAGCATCGTTGGACACTCAATTAACTTCATCAAATGTGGGCTATAGGCTTCTCCAGAAGATGGGCTGGAAAGGGAAGGGACTAGGAAAGGACGAGCAAGGAATTATTGAGCCCATTAAATCTGGAATTAGAGATCCCAAACTAGGAATTGGAAAACAAGAAGAAGACGATTTTTTCACTGCAGAGGAAAACATCCAGCGGAAAAAACTTGATGTTGAGATGGAAGAGACAGAAGCAGATGTGAAAAAACGGGAGGTTTTAGCAGAACGTGAGGAGAAAATTCAAACTGAGGTTAAAGAAATACGCAAGGTTTTCTATTGTGATCTCTGCAACAAACAGTACAAGTTGGCTATGGAATTTGAAGCGCATCTCAGCTCATATGATCATAATCATAGAAAGCGTTTTAAAGAAATGAGAGAAATGCATGGTTCAAGCAGCCGAGATGACAGAAACAAGCGGGAACAGCAACGTGAAGAGAGAGAGATGGCAAAATTTGCTCAAATTGCGGATGCCCGTAAGAAGGAGCAGCAAATGCTGGAGCAACAAGAAAGATCAGCCACGGCCCCTGCTTCTACTGAAATTAGAAATGCTACATCACTTGCAGATCAGGATCAGCGGAAAACATTAAAATTTGGATTCTCTTCTAAAGGTGGCACCTCGAAGAAGATTTTTGGTGGAGCCACAAAGAAACCTAAAGTAGTAGCCCCTGTAGCTTCAGTTTTCGGGAATGATAGTGATGAGGAATAG 903 41.53 MDKRSYSSRLETNNPNKAYAKEQDSLGDDFIDDFRLPINHRPTENVDLDNVEQASLDTQLTSSNVGYRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGIGKQEEDDFFTAEENIQRKKLDVEMEETEADVKKREVLAEREEKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKEMREMHGSSSRDDRNKREQQREEREMAKFAQIADARKKEQQMLEQQERSATAPASTEIRNATSLADQDQRKTLKFGFSSKGGTSKKIFGGATKKPKVVAPVASVFGNDSDEE 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12892130 12895881 - CmoCh10G012610.1 Cmo10g01261 390607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g01261 300 MobiDBLite consensus disorder prediction 1 24 - -
Cmo10g01261 300 Pfam G-patch domain 63 103 IPR000467 GO:0003676
Cmo10g01261 300 SUPERFAMILY beta-beta-alpha zinc fingers 155 187 IPR036236 -
Cmo10g01261 300 ProSitePatterns Zinc finger C2H2 type domain signature. 159 181 IPR013087 -
Cmo10g01261 300 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 6 300 - -
Cmo10g01261 300 MobiDBLite consensus disorder prediction 190 232 - -
Cmo10g01261 300 ProSiteProfiles G-patch domain profile. 62 107 IPR000467 GO:0003676
Cmo10g01261 300 MobiDBLite consensus disorder prediction 233 267 - -
Cmo10g01261 300 Pfam Zinc-finger double-stranded RNA-binding 157 184 IPR022755 -
Cmo10g01261 300 SMART G-patch_5 60 105 IPR000467 GO:0003676
Cmo10g01261 300 MobiDBLite consensus disorder prediction 190 281 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01261 Cmo-Chr10:12892130 Cmo18g00821 Cmo-Chr18:9611405 1.12E-08 dispersed
Cmo10g01261 Cmo-Chr10:12892130 Cmo17g00919 Cmo-Chr17:8224021 1.68E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g01261 - - cmax:111467909 575.859