Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g01262 ATGACGAGGAAGAAAGTGAAGCTGGCTTACATTGTGAACGACTCCGCAAGAAAGGCGACGTTCAAGAAGAGGAAGAGAGGGCTTATGAAGAAGGTGAGTGAATTGAGCACCCTTTGCGGGATTGAGGCATGCGCCATCGTGTTTAGCCCCTACGATGCTCAGCCCGAGCTGTGGCCTTCCCCCATCGGCGTCCAGCGCGTTCTCTCTCAATTCAAGAAGATGCCCGAGATGGAGCAGAGCAAGAAAATGGTGAACCAAGAGACGTTTCTGCGGCAGAGGATCGCCAAGGCCAATGACCAACTGAAGAAGATGAGAAAGGACAACCGGGAGAAAGAGATGACGCGGCTGATGTTTCAAAGCCTCACCGCTGCCAAAGGCCTGCATGCACTCAACATGCTTGACTTGAACGACCTCACTTGGCTCATTGATCAAAATCTCAAAGACATTACTAAACGCATTGACTCCCTCAAGAAGCCTCCCCCCCACTCTCAGCCACACCCTCACCCTCACCCTCAGCCGCCTCCCCCGCCGCAGACCGCCGCGTGGCTTATGGAGCTTGTCAGCCCTCAGGACCAAATGGGGTTCGTGGCGGATGACATGCTCTTGCCCTTCGGGGATCAAACTTATAGCCATAATAATGCAATGTGGTCAAATGCCTTTTTCCCTTAG 669 53.21 MTRKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPSPIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQSLTAAKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLKKPPPHSQPHPHPHPQPPPPPQTAAWLMELVSPQDQMGFVADDMLLPFGDQTYSHNNAMWSNAFFP 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12962769 12963678 - CmoCh10G012620.1 Cmo10g01262 390608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g01262 222 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Cmo10g01262 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo10g01262 222 MobiDBLite consensus disorder prediction 162 179 - -
Cmo10g01262 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 182 - -
Cmo10g01262 222 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Cmo10g01262 222 MobiDBLite consensus disorder prediction 154 179 - -
Cmo10g01262 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Cmo10g01262 222 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Cmo10g01262 222 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 182 - -
Cmo10g01262 222 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cmo10g01262 222 Coils Coil 87 114 - -
Cmo10g01262 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo10g01262 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo10g01262 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00535 Cmo-Chr6:2584117 Cmo10g01262 Cmo-Chr10:12962769 1.39E-44 dispersed
Cmo10g01262 Cmo-Chr10:12962769 Cmo13g00420 Cmo-Chr13:5216891 7.94E-71 dispersed
Cmo10g01262 Cmo-Chr10:12962769 Cmo18g01160 Cmo-Chr18:11794852 6.01E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10499 PF00319 SRF-TF 2.00E-18 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g01262 - - csv:101203059 384.03