Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g01273 ATGTTCCATCCGAAGAAAGCGTCGAGTATGAATTCTCACGAGAGAGGGGTGTGCGTACAAGGCGACTCTGGTCTCGTCCTCACCACCGACCCCAAGCCCCGCCTCCGTTGGACTGTCGAGCTTCATGAGCGCTTTGTCGACGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCAACCCCAAAGACCATCATGCGAGTTATGGGTGTAAAGGGTCTTACCCTTTACCACCTCAAGAGTCATCTCCAGAAATTTAGACTGGGAAAGCAGCCTCACAAGGAGTTCAATGATCATTCAATTAAGGATGGTATGCGAGGTATCACATCTTTTTTCCCTCTATTTCTTCCACCTCTAACTTACACACCCATTATATATATACGTCTTCATCTCAAAATGGAGTATTTCGCTCTTGATTCAGCTTCAGGTCTAGAACTTCATCGAAACACGATTTCTTCATCCAATATGATCAACCGCACCATGAATGAGATGCAAATGGAGGTGCAGAGAAGATTGCACGAACAATTAGAGGTGCAAAGACACCTGCAGTTGCGGATCGAGGCTCAAGGGAAATATATGCAGAGTATACTAGAGAAAGCTTGTCAAACCCTTGCCGGTGAGGACATGGCAGCTTCCGGGGGCTACAAGCTCATGCCTGGAATCCCAAGCAATAATAATCAACAAGGTGTTGGCGACATGGGCGGAGGTATCAAAGATTTTGGGACCCCTCTCGGCTTCCCTTCATTTCAAGACCTCAACCTCTATGGAGGCCACCAGCTGGATCTTCAGCAAAACGTGGATGGATTCATGCCTCACAACGACAGCTTACTGTGCTTGGGAAAGAAGAAGCCGCGGCCACCTGCAAACTACGGATCCGGAAAATATGCGTTGGACTGGCCGGATGATCTCCGGCTGCAAGGCATAGGAATGACGCCGCCGCAGCAAGCAGATCATGAATTCAAAGACATTAACATTGTTGCGACGCTGGCAGAAAGAGGTCATTTGGAGGAAATGTATGAGGCAAAGCCAGTGGGATCGGATGAGAGCATGCTAGGGGATCACAAGAAATATGATACCAATGACAATGCGTCCTTAAAGCTTCAGAGGCCGTCGCCCAGGAGGGCACCCCTTTCAGCAGAAACAGTCAACCAGTCTCTTACAAGCGCTCCGCAGGTCACACTTTCACCTTTTGGTTAA 1191 49.03 MFHPKKASSMNSHERGVCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRGITSFFPLFLPPLTYTPIIYIRLHLKMEYFALDSASGLELHRNTISSSNMINRTMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGEDMAASGGYKLMPGIPSNNNQQGVGDMGGGIKDFGTPLGFPSFQDLNLYGGHQLDLQQNVDGFMPHNDSLLCLGKKKPRPPANYGSGKYALDWPDDLRLQGIGMTPPQQADHEFKDINIVATLAERGHLEEMYEAKPVGSDESMLGDHKKYDTNDNASLKLQRPSPRRAPLSAETVNQSLTSAPQVTLSPFG 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13133524 13137613 + CmoCh10G012730.1 Cmo10g01273 390619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g01273 396 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Cmo10g01273 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
Cmo10g01273 396 Pfam MYB-CC type transfactor, LHEQLE motif 161 201 IPR025756 -
Cmo10g01273 396 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 340 IPR044848 GO:0003700
Cmo10g01273 396 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677
Cmo10g01273 396 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 340 - -
Cmo10g01273 396 MobiDBLite consensus disorder prediction 341 360 - -
Cmo10g01273 396 MobiDBLite consensus disorder prediction 375 396 - -
Cmo10g01273 396 Gene3D - 31 89 - -
Cmo10g01273 396 Pfam Myb-like DNA-binding domain 35 83 IPR001005 -
Cmo10g01273 396 MobiDBLite consensus disorder prediction 341 396 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01273 Cmo-Chr10:13133524 Cmo20g00312 Cmo-Chr20:1530207 8.12E-112 dispersed
Cmo10g01273 Cmo-Chr10:13133524 Cmo19g01150 Cmo-Chr19:9659420 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10501 PF00249 Myb_DNA-binding 2.20E-06 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g01273 - - csv:101217821 568.926