Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo10g01273 | ATGTTCCATCCGAAGAAAGCGTCGAGTATGAATTCTCACGAGAGAGGGGTGTGCGTACAAGGCGACTCTGGTCTCGTCCTCACCACCGACCCCAAGCCCCGCCTCCGTTGGACTGTCGAGCTTCATGAGCGCTTTGTCGACGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCAACCCCAAAGACCATCATGCGAGTTATGGGTGTAAAGGGTCTTACCCTTTACCACCTCAAGAGTCATCTCCAGAAATTTAGACTGGGAAAGCAGCCTCACAAGGAGTTCAATGATCATTCAATTAAGGATGGTATGCGAGGTATCACATCTTTTTTCCCTCTATTTCTTCCACCTCTAACTTACACACCCATTATATATATACGTCTTCATCTCAAAATGGAGTATTTCGCTCTTGATTCAGCTTCAGGTCTAGAACTTCATCGAAACACGATTTCTTCATCCAATATGATCAACCGCACCATGAATGAGATGCAAATGGAGGTGCAGAGAAGATTGCACGAACAATTAGAGGTGCAAAGACACCTGCAGTTGCGGATCGAGGCTCAAGGGAAATATATGCAGAGTATACTAGAGAAAGCTTGTCAAACCCTTGCCGGTGAGGACATGGCAGCTTCCGGGGGCTACAAGCTCATGCCTGGAATCCCAAGCAATAATAATCAACAAGGTGTTGGCGACATGGGCGGAGGTATCAAAGATTTTGGGACCCCTCTCGGCTTCCCTTCATTTCAAGACCTCAACCTCTATGGAGGCCACCAGCTGGATCTTCAGCAAAACGTGGATGGATTCATGCCTCACAACGACAGCTTACTGTGCTTGGGAAAGAAGAAGCCGCGGCCACCTGCAAACTACGGATCCGGAAAATATGCGTTGGACTGGCCGGATGATCTCCGGCTGCAAGGCATAGGAATGACGCCGCCGCAGCAAGCAGATCATGAATTCAAAGACATTAACATTGTTGCGACGCTGGCAGAAAGAGGTCATTTGGAGGAAATGTATGAGGCAAAGCCAGTGGGATCGGATGAGAGCATGCTAGGGGATCACAAGAAATATGATACCAATGACAATGCGTCCTTAAAGCTTCAGAGGCCGTCGCCCAGGAGGGCACCCCTTTCAGCAGAAACAGTCAACCAGTCTCTTACAAGCGCTCCGCAGGTCACACTTTCACCTTTTGGTTAA | 1191 | 49.03 | MFHPKKASSMNSHERGVCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRGITSFFPLFLPPLTYTPIIYIRLHLKMEYFALDSASGLELHRNTISSSNMINRTMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGEDMAASGGYKLMPGIPSNNNQQGVGDMGGGIKDFGTPLGFPSFQDLNLYGGHQLDLQQNVDGFMPHNDSLLCLGKKKPRPPANYGSGKYALDWPDDLRLQGIGMTPPQQADHEFKDINIVATLAERGHLEEMYEAKPVGSDESMLGDHKKYDTNDNASLKLQRPSPRRAPLSAETVNQSLTSAPQVTLSPFG | 396 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 13133524 | 13137613 | + | CmoCh10G012730.1 | Cmo10g01273 | 390619 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo10g01273 | 396 | SUPERFAMILY | Homeodomain-like | 31 | 87 | IPR009057 | - | |
Cmo10g01273 | 396 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 29 | 89 | IPR017930 | - | |
Cmo10g01273 | 396 | Pfam | MYB-CC type transfactor, LHEQLE motif | 161 | 201 | IPR025756 | - | |
Cmo10g01273 | 396 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 1 | 340 | IPR044848 | GO:0003700 | |
Cmo10g01273 | 396 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 32 | 87 | IPR006447 | GO:0003677 | |
Cmo10g01273 | 396 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR APL | 1 | 340 | - | - | |
Cmo10g01273 | 396 | MobiDBLite | consensus disorder prediction | 341 | 360 | - | - | |
Cmo10g01273 | 396 | MobiDBLite | consensus disorder prediction | 375 | 396 | - | - | |
Cmo10g01273 | 396 | Gene3D | - | 31 | 89 | - | - | |
Cmo10g01273 | 396 | Pfam | Myb-like DNA-binding domain | 35 | 83 | IPR001005 | - | |
Cmo10g01273 | 396 | MobiDBLite | consensus disorder prediction | 341 | 396 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo10g01273 | Cmo-Chr10:13133524 | Cmo20g00312 | Cmo-Chr20:1530207 | 8.12E-112 | dispersed | |
Cmo10g01273 | Cmo-Chr10:13133524 | Cmo19g01150 | Cmo-Chr19:9659420 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10501 | PF00249 | Myb_DNA-binding | 2.20E-06 | CL0123 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo10g01273 | - | - | csv:101217821 | 568.926 |