Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00002 ATGAATAGTCTGGTCTGGGCCATCTTCGTTCCTCTCTTTGCTGCTTTCTTGACCACAACTGATGCAGTCGTGCGGGGAAGGAGTCAACATACCGAACGAATTTCGGGCAGTGCTGGTGATGTTTTGGAGGATAATCCTGTGGGAAGGTTGAAGGTGTTTGTCTATGAGCTCCCTAGCAAATACAACAAGAAAATTCTCCAGAAAGACCCTAGATGCCTTAATCATATGTTCGCAGCTGAGATCTTCATGCATCGCTTCCTTTTAACTAGTCCTGTTCGAACCCTTAATCCTGAAGAAGCTGACTGGTTTTATACTCCAGTTTATACAACTTGCGATCTGACTCCAAATGGTCTCCCTTTGCCATTTAAGTCCCCTCGAATGATGAGAAGTGCAATACAACTTATTTCTTCAAACTGGCCTTACTGGAACCGGACTGAAGGGGCTGATCACTTTTTTGTTGTACCCCATGATTTTGGAGCTTGCTTCCACTATCAAGAAGAGAAGGCAATTGAAAGAGGAATTCTTCCTTTGCTACAACGTGCTACCTTGGTTCAGACTTTTGGACAACGAAATCATGTTTGCTTGAAGGAGGGATCAATTACAATTCCTCCATACGCTCCTCCTCAGAAAATGCACTCCCACCTCATTCCTGAAAAAACTCCTAGGTCCATCTTTGTTTACTTCCGTGGACTATTCTATGATGTGGGAAATGATCCAGAAGGTGGTTATTACGCAAGAGGTGCAAGAGCAGCAGTATGGGAGAACTTCAAGGATAATCCTCTTTTTGATGTTTCAACAGAGCATCCAACTACATACTATGAGGACATGCAGCGAGCTGTGTTTTGTCTCTGTCCGCTTGGATGGGCTCCTTGGAGCCCTAGATTGGTTGAGGCTGTAATATTTGGTTGCATCCCTGTTATCATAGCAGATGACATTGTTCTGCCCTTTGCCGATGCAATTCCTTGGGAAGAAATTGGGATGTTTGTAGATGAGAAAGATGTTGCTAACTTGGACACAATATTAACTTCCATCCCACTTGAAATGATATTAAGAAAGCAGAGACTATTAGCAAATCCTTCCATGAAACAGGCAATGTTATTTCCCCAGCCTGCTCAACCTGGAGATGCTTTTCACCAGGTTCTGAACGGACTTGCCCGAAAGTTGCCTCATGACAGGAGTGTCTACCTTAAGTCCGCATACCAATTGAGGAATGAGAATCGATAA 1224 43.79 MNSLVWAIFVPLFAAFLTTTDAVVRGRSQHTERISGSAGDVLEDNPVGRLKVFVYELPSKYNKKILQKDPRCLNHMFAAEIFMHRFLLTSPVRTLNPEEADWFYTPVYTTCDLTPNGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLKEGSITIPPYAPPQKMHSHLIPEKTPRSIFVYFRGLFYDVGNDPEGGYYARGARAAVWENFKDNPLFDVSTEHPTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGMFVDEKDVANLDTILTSIPLEMILRKQRLLANPSMKQAMLFPQPAQPGDAFHQVLNGLARKLPHDRSVYLKSAYQLRNENR 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3386 10300 - CmoCh11G000020.1 Cmo11g00002 390621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00002 407 Pfam Exostosin family 49 344 IPR040911 -
Cmo11g00002 407 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 9 398 IPR004263 GO:0006486|GO:0016757
Cmo11g00002 407 PANTHER BETA-1,4-XYLOSYLTRANSFERASE IRX10L-RELATED 9 398 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00002 K20870 IRX10; putative beta-1,4-xylosyltransferase IRX10 [EC:2.4.2.-] - csv:101205418 812.372
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01709 Cmo-Chr6:11764091 Cmo11g00002 Cmo-Chr11:3386 0 dispersed
Cmo11g00002 Cmo-Chr11:3386 Cmo20g00550 Cmo-Chr20:2662170 1.25E-98 dispersed
Cmo11g00002 Cmo-Chr11:3386 Cmo14g01429 Cmo-Chr14:11654147 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g8 . Blo16g00315 Bda06g00703 . . Bpe13g00160 . Bma12g01101 . . . Cma11g00002 . Car11g00002 . . Cpe04g01642 . . . . . . . Cla06g01790 Cam06g1989 Cec06g2039 Cco06g2049 Clacu06g1946 Cmu06g1886 Cre06g2697 . . Cone13ag0269 Cone19ag0253 . . . . . . . . Bpe07g00913 . . . . . Cmo11g00002 . . . . . . . . . . . . . . . . . . . . Lsi06g01689 Csa01g00004 Chy02g02709 Cme02g02119
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001872 1 2 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 3 1 2 3 5 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00002 Cmo_Chr11 FPKM 18.395252 18.199968 27.278704 28.860739 15.958108 15.99202 16.981882 26.978027 24.052073 26.958191