Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00003 ATGGATCCAGAAGCCCTCTCGGCCACTTTGTTCAAATGGGATCCTCGAGGAATGGTGGGGGGAGGCGGCGGCGCATCCCTCCCAGCACCACTGCCGCCCTACTCGCTGCGGCCCAGGGAATTGGGACTGGGAGGCCTGGAGGAGTTGTTCCAGGCTTACGGGATCAGGTACTACACCGCCGCTAAAATTGCGGAACTGGGATTCACCGTCAGCACCCTCCTGGACATGAAAGACGAAGAGTTGGAGGATATGATAAACAGCCTCTCTCATATTTTCCGGTGGGAGCTTCTGGTAGGTGAGAGATACGGAATTAAGGCTGCTGTAAGAGCCGAGCGCAGACGTGTAGATGACGAGATGGATTCCTCCAGGCGCCGGCACCTCTTCTCCAATGACACCCATAACAACGTGGTCCTGGATGCCCTTTCCCAGGAAGGGCTATCGGAAGAGCCGGTGCAGCAGGAAAAAGAGGTGGTGGGGAGCGGAGGAGGAGGAACTTGGGAGGCAGTTGCAGCGGGTGAGATGAGGAAGAAGCAGCGGAAGAGAAACGGATCAAAGAAGAAGCAGGTGATGGTGATGGAGGAGGATCATCACGATGAAACTGAGGAGGGAGGTGGGGAGGAGGAGGATAATATGGAAGTCAGCGAGAGACAGCGGGAGCATCCATTCATCGTAACCGAGCCAGGGGAGGTTGCACGGGGGAAAAAGAACGGCCTTGACTATCTCTTCCACCTATATGAGCAGTGTCGTGAGTTTTTGATCCAAGTCCAGAACATTGCCAAGGAACGAGGAGAAAAATGTCCCACTAAGGTGACAAACCAGGTGTTTAGATATGCGAAGAAGGTGGGAGCAAGTTACATAAACAAGCCAAAAATGAGACACTACGTGCACTGCTATGCGTTGCATTGTCTGGACGAGGAAGCGTCCAACGCGTTGAGGAGGGTTTTCAAAGAGAGGGGTGAAAATGTGGGAGCTTGGCGACAGGCATGCTATAAGCCTTTGGTAGCCACAGCAGCTTCCCAAGGTTGGGACATCGATGCCATTTTCAACGCACATCCACGCCTCGCCATCTGGTATGTGCCCACTAAACTCCGCCAACTCTGCCACGCCGAGCGCAACAGTGCCAAAGCCTCCACCTCCGCCGCCGTAAATCACTTGCCATTTTAA 1164 54.21 MDPEALSATLFKWDPRGMVGGGGGASLPAPLPPYSLRPRELGLGGLEELFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEDMINSLSHIFRWELLVGERYGIKAAVRAERRRVDDEMDSSRRRHLFSNDTHNNVVLDALSQEGLSEEPVQQEKEVVGSGGGGTWEAVAAGEMRKKQRKRNGSKKKQVMVMEEDHHDETEEGGGEEEDNMEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRYAKKVGASYINKPKMRHYVHCYALHCLDEEASNALRRVFKERGENVGAWRQACYKPLVATAASQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNSAKASTSAAVNHLPF 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11592 13757 + CmoCh11G000030.1 Cmo11g00003 390622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00003 387 MobiDBLite consensus disorder prediction 172 216 - -
Cmo11g00003 387 PANTHER PROTEIN LEAFY 1 387 IPR002910 GO:0003677|GO:0006355
Cmo11g00003 387 MobiDBLite consensus disorder prediction 145 164 - -
Cmo11g00003 387 PANTHER PROTEIN LEAFY 1 387 - -
Cmo11g00003 387 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 212 374 IPR035209 GO:0003677
Cmo11g00003 387 Pfam Floricaula / Leafy protein SAM domain 43 118 IPR035079 -
Cmo11g00003 387 Gene3D Protein LEAFY 213 381 IPR038276 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00007 Cmo11g00003 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00007 Cmo-Chr10:69447 Cmo11g00003 Cmo-Chr11:11592 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10502 PF17538 C_LFY_FLO 1.10E-107 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00003 - - cmax:111484867 663.685