Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00004 ATGGCGCAGGTTTCTCAGTTGCCTTGCGACGGCGATGGCATTTGCATGCGCTGCCAGGCCAAGCCTTCCGACTTGGAGACGATCACTTGCAAAACTTGCGTCGCCCCTTGGCACGTCGGCTGTCTCTCAAATCCCCCTCAAATCCTGGCATCTACCCTTCAATGGGACTGTCCCGACTGTTCCCCCCCACCCGAAGATGCTTCCCTGCCTCCACCCGCCAGCTGTCCACTTCCCGTTACGCCTTCCAATGACCTGGTTGCTGCGATTCGAGCCATTGAGGCCGATGCCTCCCTTACTGACCGCGAGAAGGCAAAGAAGCGCCAGGAGCTACTCAGTGGAAAGTCTCAGTCTGAGAAGGACGATCATGACGCCAACGAAAAAAGAGGGGACGATGTTTTGGATTTGTTCGACGAGAGATTGAAGTGCTCCTTTTGCATGCAGTTACCAGAAAGGCCCGTCACTACTCCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACAAGGAAAAAACACTTGTGCAAAGTGCCGCTGCGTGATTCCCTCCAAAATGGCTAGCCACCCCCGTATTAATTCCACACTTGTAGTGGCCATACGTATGGCTAAAATGTCAAAATCAATTATTTCTGGAGGATCTCAGAAGGTTTATCATGTTGTCCACAATCTAAATAGGCCAGATAAAGCCTATACCACTGACCGGGCACAAAAAAAAGGGAAAGCTAATGCTGCAAGTGGAAAAATATTTGTTACAATTCCATCTGATCATTTTGGTCCTATTCTTGCTGAAAATGATCCAGAGAGAAACCAGGGTGTTCTGGTTGGGGAATGCTGGGAGGATAGGTTAGAATGTCGTCAGTGGGGTGCTCACTTTCCACATGTTGCAGGCATAGCAGGGCAGTCAAATAACGGTGCACAATCAGTGGTACTTTCTGGTGGTTACCAAGATGATGAAGATCATGGGGAGTGGTTCCTCTACACTGGAAGTGGAGGTCGAGACCTTAGTGGGAACAAGCGTACAAGCAAGGATCAGTCTTTTGACCAGAAATTTGAGAAATCAAACAAAGCGCTACAAGTAGGTGGCTGCAAATTAATGCTTGATGTTCATGATTTTGGGGTTTCTATTTCATTTGATGTGTTGTTGTGCGTCCATATATTTGTTTTGAACCTTGAGTTATACAAAATATATCTTTCTGAAGACAGTACCAAAACCTGGTTTACAGTGCCTTGGGTCTCTTCATTTTTCATTTTCTACATAAAAGTTAGAGTGGGCGAAGAATTATTGGATTTCTATTTACTTAGAACTGGAAAAGCTCTTGTGTATGACGTGAGTAAACTTCTGATTTTGAAACTAAAGAATGCAATTAAACTACTACTGTTTTGGTTGAACATGTTCAAATTGTTTTTCCATGTAAGAGATATGGGAAAGGCTGACAACTTTCACTATTTTATTTATCGCTTGTCAAAAGTGCATTGGTTTTTCATGCAAGAATTGAAGTTTCTTGGTGGACCTCTTTGGTTGTGTTGCATTACAATTGGTGAAATACCTTGGGAAACTAGTAGTACCCGTTGCTTCTTGATGTTGTATGTTCGGTTAGATCTTTATTCCATTTTACTGACGTGGTATGTTAACCCTCTTGATAACAGATCTCACAAAGAAAAGCGTTCCTCATATGCTCCAGAAAAGGGGTTGCGGTATGATGGAATTTATAGGATTGAGAAGTGTTGGCGTAAAGTGGGAATTCAGGGCTTTAAGGTATGTCGGTATTTGTTTGTTAGATGCGACAATGATCCTGCACCATGGACAAGTGACGAACATGGAGATCGACCTAGACCCTTACCTGCAATTCCAGAGTTAAAAAAAGCAACAGACATTACGGAGAGGAAGAAAGATCCTTCATGGGACTTTGATGAGAAAGATAATCGGTGGAAGTGGAGCAAACCTCCACCAACGAGCAAGAAGTCAGTTGAAACCGAAGATTCTACTTCTGGGAAGAAGTCAAGGAGGAGAATGAGGCAGTCGCATAATATGAATGTTCGAGAAAGGTTACTGAAAGAGTTTAGCTGCCTTATTTGCCGGGAGGTGATGAATCTGCCCATTACTACGCCTTGTGCCCATAACTTTTGTAAGTCATGTTTGGAAGGTGCTTTTGCGGGCAAGTCATTCTTGAGAGAGAGAAACAGTGGTGGACGGGCTCTTAGATCCCGGAAGAATGTCATGGCTTGCCCTTGTTGCCCCACGGATATATCTGATTTTCTACAGAATCTTCAGGTAAATAGAGAATTGTTGGATGTGATCGAGTCGTTGAAAAGTAAGATTGAAGAAGCGGATGCATCTGAGAAGCCCTGTGAAGACGAGATAGAAGGGGAAGGGGAAGGGGAAGAGGAACAGGAACAGGAACAGGAAGAGGAGGGAAAAGATGGAAGCAACGGAAATGAAAGCAGCCGCCCTGTGGAAACAAGAAAGCGAGCAAAGGTGGTGGTTAATGGTGGGGAGGAAAATTATTCGCCGTCAAGCCCCGTCCACGTGGATGATTTGGAATGA 2553 44.61 MAQVSQLPCDGDGICMRCQAKPSDLETITCKTCVAPWHVGCLSNPPQILASTLQWDCPDCSPPPEDASLPPPASCPLPVTPSNDLVAAIRAIEADASLTDREKAKKRQELLSGKSQSEKDDHDANEKRGDDVLDLFDERLKCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKNTCAKCRCVIPSKMASHPRINSTLVVAIRMAKMSKSIISGGSQKVYHVVHNLNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPILAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSNNGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKSNKALQVGGCKLMLDVHDFGVSISFDVLLCVHIFVLNLELYKIYLSEDSTKTWFTVPWVSSFFIFYIKVRVGEELLDFYLLRTGKALVYDVSKLLILKLKNAIKLLLFWLNMFKLFFHVRDMGKADNFHYFIYRLSKVHWFFMQELKFLGGPLWLCCITIGEIPWETSSTRCFLMLYVRLDLYSILLTWYVNPLDNRSHKEKRSSYAPEKGLRYDGIYRIEKCWRKVGIQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRPLPAIPELKKATDITERKKDPSWDFDEKDNRWKWSKPPPTSKKSVETEDSTSGKKSRRRMRQSHNMNVRERLLKEFSCLICREVMNLPITTPCAHNFCKSCLEGAFAGKSFLRERNSGGRALRSRKNVMACPCCPTDISDFLQNLQVNRELLDVIESLKSKIEEADASEKPCEDEIEGEGEGEEEQEQEQEEEGKDGSNGNESSRPVETRKRAKVVVNGGEENYSPSSPVHVDDLE 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16697 23713 + CmoCh11G000040.1 Cmo11g00004 390623

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00004 850 Pfam SAD/SRA domain 273 361 IPR003105 -
Cmo11g00004 850 Pfam SAD/SRA domain 554 599 IPR003105 -
Cmo11g00004 850 MobiDBLite consensus disorder prediction 783 806 - -
Cmo11g00004 850 ProSitePatterns Zinc finger RING-type signature. 707 716 IPR017907 -
Cmo11g00004 850 Gene3D - 241 368 IPR036987 -
Cmo11g00004 850 ProSiteProfiles Zinc finger RING-type profile. 692 748 IPR001841 -
Cmo11g00004 850 MobiDBLite consensus disorder prediction 777 850 - -
Cmo11g00004 850 CDD RING-HC 142 180 - -
Cmo11g00004 850 Pfam RING-type zinc-finger 692 724 IPR027370 -
Cmo11g00004 850 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 363 - -
Cmo11g00004 850 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 552 822 - -
Cmo11g00004 850 ProSiteProfiles YDG domain profile. 270 426 IPR003105 -
Cmo11g00004 850 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Cmo11g00004 850 Gene3D - 551 635 IPR036987 -
Cmo11g00004 850 SMART PHD_3 14 61 IPR001965 -
Cmo11g00004 850 SUPERFAMILY RING/U-box 133 189 - -
Cmo11g00004 850 MobiDBLite consensus disorder prediction 605 650 - -
Cmo11g00004 850 Coils Coil 762 782 - -
Cmo11g00004 850 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 643 780 IPR013083 -
Cmo11g00004 850 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 209 IPR013083 -
Cmo11g00004 850 SUPERFAMILY PUA domain-like 244 363 IPR015947 -
Cmo11g00004 850 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 61 IPR013083 -
Cmo11g00004 850 SUPERFAMILY PUA domain-like 552 630 IPR015947 -
Cmo11g00004 850 ProSiteProfiles YDG domain profile. 552 596 IPR003105 -
Cmo11g00004 850 SMART ring_2 692 748 IPR001841 -
Cmo11g00004 850 SMART ring_2 142 180 IPR001841 -
Cmo11g00004 850 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 363 IPR045134 -
Cmo11g00004 850 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 552 822 IPR045134 -
Cmo11g00004 850 MobiDBLite consensus disorder prediction 605 678 - -
Cmo11g00004 850 Pfam Zinc finger, C3HC4 type (RING finger) 142 180 IPR018957 GO:0046872
Cmo11g00004 850 SUPERFAMILY FYVE/PHD zinc finger 7 67 IPR011011 -
Cmo11g00004 850 Coils Coil 787 807 - -
Cmo11g00004 850 MobiDBLite consensus disorder prediction 100 127 - -
Cmo11g00004 850 MobiDBLite consensus disorder prediction 807 831 - -
Cmo11g00004 850 SMART G9a_1 265 429 IPR003105 -
Cmo11g00004 850 SUPERFAMILY RING/U-box 685 773 - -
Cmo11g00004 850 ProSiteProfiles Zinc finger RING-type profile. 142 181 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00004 K10638 UHRF1, NP95; E3 ubiquitin-protein ligase UHRF1 [EC:2.3.2.27] - csv:116401648 655.981
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00004 Cmo-Chr11:16697 Cmo06g01292 Cmo-Chr6:9748567 8.25E-10 dispersed
Cmo04g02065 Cmo-Chr4:11768003 Cmo11g00004 Cmo-Chr11:16697 2.20E-142 transposed
Cmo11g00004 Cmo-Chr11:16697 Cmo14g00781 Cmo-Chr14:3959195 8.32E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g14 . . Bda06g00705 Bda15g00700 Bpe12g00455 . . Bma12g01099 . . . Cma11g00004 . Car11g00004 . . Cpe04g01640 . . . . . . . . . . . . . . . . . . . . . . . Blo15g00186 . . Bpe07g00911 . . Bma08g00283 . . Cmo11g00004 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002789 2 4 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 1 1 1 2 1 2 3 1 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00004 Cmo_Chr11 FPKM 8.097416 8.84319 3.057441 3.116912 8.895706 9.711402 7.593046 6.786349 6.916441 6.340377