Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo11g00006 ATGGCTAGAGTTCTTGTTCAGTCCACAAATATTCCTGGTCTGGTCGGTGGAAGGAAGACTGGCCTATCAAGAGGATCAGTAAATGTAAAACGGGCTGTTAGAATGATGGCCAGCGTTCATGCACCTGGTTCGAGAATAAGAAGTTTCTCTGGACTTAGAGAATTTAATTCTTTGGATAACATGTTGAGAACTAGACAGGATTTTCATTCCAAGGTGGCCATTACAATCTCTTCTAGGCGACGAAAGGCTACCAAATGTGTCCCAAGAGCCATGTTTGAGCGATTCACAGAAAAGGCAATTAAAGTTATCATGCTTGCCCAGGAGGAAGCGAGGCGGCTTGGTCACAATTTTGTTGGCACAGAGCAGATACTTTTAGGTCTTATTGGCGAAGGTACTGGTATCGCTGCCAAGGTTCTTAAATCCATGGGAATTAATCTTAAAGACGCGCGCGTGGAGGTGGAGAAGATAATTGGTCGGGGCAGCGGGTTTGTTGCTGTAGAAATTCCCTTCACTCCTCGTGCAAAGCGTGTTTTGGAACTTTCTCTCGAGGAAGCTCGCCAACTTGGTCACAATTATATTGGATCAGAGCACTTGCTTCTGGGTCTACTTCGTGAAGGTGAGGGCGTTGCAGCTCGTGTTCTTGAAAACTTGGGTGCTGATCCTAAGGCTGTTGGTGCTGGTGTTGGAGGAGGGAGCAGTGGGAACAAGATGCCAACTCTGGAAGAGTACGGCACAAATTTAACTAAGCTGGCTGAAGAGGGTAAACTAGATCCTGTTGTTGGAAGGCAGCAGCAAATTGAACGTGTAACACAAATTTTGGGCCGGCGAACAAAAAATAATCCTTGCCTCATTGGTGAGCCTGGTGTTGGGAAAACTGCTATTGCAGAAGGCCTGGCACAAAGGATTGCTAATGGGGATGTTCCTGAAACAATCGAAGGAAAGAAGGTCATAACCCTGGATATGGGACTTCTCGTAGCTGGCACAAAATATCGTGGAGAGTTTGAGGAAAGATTAAAGAAACTTATGGAGGAAATTAAACAAAGTGATGAGATTATCCTTTTCATTGATGAGGTGCACACATTAATTGGAGCAGGGGCTGCAGAAGGAGCTATCGATGCGGCAAATATATTGAAACCTGCCCTTGCAAGAGGTGAACTGCAGGTGTGCATTGGAGCCACAACATTGGATGAATACAGGAAGCACATTGAGAAAGATCCGGCCTTGGAAAGGAGATTTCAGCCCGTCAAAGTGCCGGAACCGTCTGTGGATGAAACCATACAGATTTTGAAAGGCCTTAGAGAGCGCTATGAAATCCACCACAAACTTCGATACACGGATGAAGCATTAGTAGCTGCTGCACAACTGTCATACCAGTACATCAGTGATCGATTCTTGCCTGATAAGGCAATTGACTTGGTTGATGAAGCTGGTTCTCGGGTTCGCCTTCGTCATGCGCAACTACCTGAGGAAGCTAGAGAGCTTGAGAAAGAGCTGAGGCAGATCACAAAGGAGAAGAATGAGGCTGTTCGAAGTCAGGACTTTGAGAAGGCTGGAGAATTGCGTGATAGAGAAATGGAATTTAAGACTAAGATCTCTGCTCTAGTTGATAAGGGCAAGGAGATGAGCAAGGCTGAAAGTGAGGCAGGAGATGTTGGCCCTGTTGTGACCGAAGTTGATATTCAGCATATTGTTTCCTCCTGGACAGGCATTCCTGTCGAGAAAGTATCTACTGACGAATCTGACCGGCTCCTCAAAATGGAAGAAACCCTCCATAAGAGGGTCATTGGTCAAGATGAAGCAGTTAAAGCCATCAGCCGTGCCATACGTCGAGCTCGTGTTGGTCTCAAGAATCCCAATCGTCCAATTGCAAGCTTTATATTTTCTGGTCCAACGGGTGTTGGTAAATCTGAGTTGGCAAAAGCATTGGCTGCGTACTATTTTGGCTCTGAAGAAGCAATGATTCGCCTTGACATGAGTGAATTTATGGAAAGGCATACCGTCTCCAAGCTCATTGGTTCCCCTCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTAACTGAGGCTGTTCGTCGTCGTCCATACACAGTGGTGCTTTTTGATGAGATTGAGAAGGCTCATCCTGATGTGTTCAATATGATGCTTCAAATTTTGGAGGATGGAAGGTTGACGGATAGCAAGGGCAGAACTGTAGACTTCAAGAATACACTTCTGATAATGACATCAAACGTGGGAAGCAGTGTTATAGAGAAGGGAGGTCGCAGAATAGGGTTTGACCTTGATTATGATGAGAAGGATAGTAGTTATAACCGAATCAAGAGCTTGGTGACAGAGGAACTGAAACAGTACTTCAGGCCTGAGTTTCTGAATAGGTTGGATGAGATGATTGTCTTCCGTCAGCTCACTAAGCTGGAGGTGAAGGAGATTGCGGATATAATGCTGAAGGAGGTATTTGATAGATTAAAAGCAAAAGAAGTTGAACTTCAAGTGACAGAGAGATTTAGAGATAGGGTGGTTGAGGAAGGATATAACCCAAGCTATGGTGCGAGGCCATTACGAAGGGCAATCATGAGACTTTTGGAGGACAGCATGGCTGAGAAGATGCTGGCGAGGGAGATCAAGGAGGGCGACTCAGTAATAGTGGATGTTGATTCAGATGGAAACGTGACAGTGCTCAACGGCAGCAGTGGTGCCCCCGAGTCCTTGCCCGATGCTATCACCGTGTAA 2727 45.87 MARVLVQSTNIPGLVGGRKTGLSRGSVNVKRAVRMMASVHAPGSRIRSFSGLREFNSLDNMLRTRQDFHSKVAITISSRRRKATKCVPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPKAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQVCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLVDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRSQDFEKAGELRDREMEFKTKISALVDKGKEMSKAESEAGDVGPVVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKAKEVELQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAPESLPDAITV 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29958 38222 + CmoCh11G000060.1 Cmo11g00006 390625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo11g00006 908 ProSiteProfiles Clp repeat (R) domain profile. 92 235 IPR004176 -
Cmo11g00006 908 CDD AAA 595 743 - -
Cmo11g00006 908 Pfam C-terminal, D2-small domain, of ClpB protein 801 881 IPR019489 -
Cmo11g00006 908 Gene3D - 573 799 IPR027417 -
Cmo11g00006 908 Pfam Clp amino terminal domain, pathogenicity island component 106 158 IPR004176 -
Cmo11g00006 908 Pfam Clp amino terminal domain, pathogenicity island component 182 224 IPR004176 -
Cmo11g00006 908 ProSiteProfiles UVR domain profile. 495 530 IPR001943 GO:0005515
Cmo11g00006 908 ProSitePatterns Chaperonins clpA/B signature 2. 655 673 IPR028299 -
Cmo11g00006 908 Gene3D UVR domain 487 551 - -
Cmo11g00006 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 520 IPR027417 -
Cmo11g00006 908 SMART ClpB_D2_small_2 801 891 IPR019489 -
Cmo11g00006 908 Pfam AAA domain (Cdc48 subfamily) 620 794 IPR003959 GO:0005524|GO:0016887
Cmo11g00006 908 Gene3D - 231 421 IPR027417 -
Cmo11g00006 908 SMART AAA_5 277 418 IPR003593 -
Cmo11g00006 908 SMART AAA_5 621 802 IPR003593 -
Cmo11g00006 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 670 688 IPR001270 GO:0005524
Cmo11g00006 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 625 643 IPR001270 GO:0005524
Cmo11g00006 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 699 717 IPR001270 GO:0005524
Cmo11g00006 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 732 746 IPR001270 GO:0005524
Cmo11g00006 908 PANTHER CHAPERONE PROTEIN CLPC1, CHLOROPLASTIC 75 905 - -
Cmo11g00006 908 Pfam AAA lid domain 421 522 IPR041546 -
Cmo11g00006 908 Coils Coil 331 351 - -
Cmo11g00006 908 PANTHER ATP-DEPENDENT CLP PROTEASE 75 905 - -
Cmo11g00006 908 Coils Coil 484 511 - -
Cmo11g00006 908 Gene3D - 91 229 IPR036628 -
Cmo11g00006 908 CDD AAA 260 413 - -
Cmo11g00006 908 ProSitePatterns Chaperonins clpA/B signature 1. 372 384 IPR018368 GO:0005524
Cmo11g00006 908 Gene3D - 423 567 - -
Cmo11g00006 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 570 887 IPR027417 -
Cmo11g00006 908 SUPERFAMILY Double Clp-N motif 93 224 IPR036628 -
Cmo11g00006 908 Gene3D - 801 897 - -
Cmo11g00006 908 Pfam ATPase family associated with various cellular activities (AAA) 282 412 IPR003959 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo11g00006 K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC - csv:101207083 1645.17
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00016 Cmo11g00006 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01077 Cmo-Chr1:8973995 Cmo11g00006 Cmo-Chr11:29958 0 dispersed
Cmo01g01078 Cmo-Chr1:8980270 Cmo11g00006 Cmo-Chr11:29958 1.80E-16 dispersed
Cmo09g00422 Cmo-Chr9:1866442 Cmo11g00006 Cmo-Chr11:29958 0 dispersed
Cmo11g00006 Cmo-Chr11:29958 Cmo13g00139 Cmo-Chr13:805006 0 dispersed
Cmo10g00016 Cmo-Chr10:109443 Cmo11g00006 Cmo-Chr11:29958 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g29 . . Bda06g00709 Bda15g00698 . . . . . . Cma10g00018 Cma11g00007 Car10g00013 Car11g00006 . . . . . . . . . . Cla06g01783 Cam06g1977 Cec06g2027 Cco06g2035 Clacu06g1934 Cmu06g1875 Cre06g2687 . . Cone13ag0256 Cone19ag0241 . . . . . Blo15g00190 . . Bpe07g00907 . . . . Cmo10g00016 Cmo11g00006 . . . . . Cpe18g00938 . . . . . . . . . . . . . . Lsi06g01681 Csa01g00010 Chy02g02703 Cme02g02111
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002235 2 2 2 1 2 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 1 2 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo11g00006 Cmo_Chr11 FPKM 9.546925 9.464107 8.58304 7.563359 19.072439 18.365685 18.888201 5.882364 5.920928 6.024908